Strain Fitness in Pseudomonas putida KT2440 around PP_5362

Experiment: Adaptation in M9 media timecourse 3; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 3
6,110,655	+		PP_5361	0.29	+0.2
6,110,655	+		PP_5361	0.29	-0.4
6,110,684	+		PP_5361	0.32	-0.1
6,110,749	+		PP_5361	0.37	-0.1
6,110,750	-		PP_5361	0.37	+0.3
6,110,766	+		PP_5361	0.38	-0.7
6,110,767	-		PP_5361	0.39	-0.7
6,110,767	-		PP_5361	0.39	-0.3
6,110,767	-		PP_5361	0.39	+1.1
6,110,767	-		PP_5361	0.39	-0.9
6,110,767	-		PP_5361	0.39	+1.1
6,110,846	+		PP_5361	0.45	-0.0
6,110,846	+		PP_5361	0.45	+0.7
6,110,846	+		PP_5361	0.45	+0.9
6,110,846	+		PP_5361	0.45	-0.0
6,110,846	+		PP_5361	0.45	-0.1
6,110,846	+		PP_5361	0.45	+1.4
6,110,847	-		PP_5361	0.45	+1.6
6,110,847	-		PP_5361	0.45	-0.9
6,110,880	+		PP_5361	0.48	+0.5
6,110,881	-		PP_5361	0.48	-0.9
6,110,881	-		PP_5361	0.48	-0.9
6,110,915	+		PP_5361	0.51	+0.4
6,111,076	+		PP_5361	0.64	-2.5
6,111,077	-		PP_5361	0.64	+0.0
6,111,077	-		PP_5361	0.64	+0.2
6,111,203	+		PP_5361	0.75	-0.3
6,111,226	+		PP_5361	0.77	-0.3
6,111,389	+				+0.6
6,111,390	-				+0.2
6,111,390	-				-0.5
6,111,390	-				-0.5
6,111,403	-				+0.1
6,111,562	-				+0.5
6,111,655	+				+0.6
6,111,759	+				+1.6
6,111,760	-		PP_5362	0.36	+0.0
6,111,762	+		PP_5362	0.36	-0.1
6,111,762	+		PP_5362	0.36	-0.4
6,111,762	+		PP_5362	0.36	+0.4
6,111,762	+		PP_5362	0.36	+0.8
6,111,762	+		PP_5362	0.36	-0.5
6,111,762	+		PP_5362	0.36	-0.7
6,111,762	+		PP_5362	0.36	-0.7
6,111,762	+		PP_5362	0.36	+0.0
6,111,763	-		PP_5362	0.36	+0.8
6,111,763	-		PP_5362	0.36	+0.2
6,111,763	-		PP_5362	0.36	+0.0
6,111,763	-		PP_5362	0.36	-0.1
6,111,763	-		PP_5362	0.36	+0.5
6,111,763	-		PP_5362	0.36	+2.6
6,111,763	-		PP_5362	0.36	+0.3
6,111,773	+		PP_5362	0.39	+0.6
6,111,774	-		PP_5362	0.39	-0.1
6,111,792	+		PP_5362	0.44	+0.4
6,111,793	-		PP_5362	0.44	-1.1
6,111,793	-		PP_5362	0.44	+0.1
6,111,793	-		PP_5362	0.44	+0.4
6,111,793	-		PP_5362	0.44	+0.3
6,111,793	-		PP_5362	0.44	+1.2
6,111,793	-		PP_5362	0.44	+0.2
6,111,793	-		PP_5362	0.44	-0.8
6,111,793	-		PP_5362	0.44	-0.2
6,111,793	-		PP_5362	0.44	+0.2
6,112,042	+				+0.1
6,112,042	+				-1.0
6,112,042	+				+0.1
6,112,042	+				-0.2
6,112,049	+				+0.2
6,112,049	+				+0.3
6,112,114	+				+1.6
6,112,114	+				+0.6
6,112,114	+				+0.2
6,112,114	+				-1.0
6,112,115	-				-0.2
6,112,168	-				-0.3
6,112,206	+				+0.3
6,112,206	+				+1.1
6,112,207	-				-0.0
6,112,354	+		PP_5363	0.26	+1.2
6,112,354	+		PP_5363	0.26	+1.1
6,112,354	+		PP_5363	0.26	+0.3
6,112,355	-		PP_5363	0.26	-0.4
6,112,355	-		PP_5363	0.26	-0.7
6,112,355	-		PP_5363	0.26	-0.4
6,112,355	-		PP_5363	0.26	-0.4
6,112,409	-		PP_5363	0.36	-0.8
6,112,514	-		PP_5363	0.56	+0.9
6,112,520	+		PP_5363	0.57	+0.3
6,112,520	+		PP_5363	0.57	-1.1
6,112,520	+		PP_5363	0.57	-0.4
6,112,520	+		PP_5363	0.57	+0.6
6,112,521	-		PP_5363	0.58	-0.4
6,112,521	-		PP_5363	0.58	+1.0
6,112,521	-		PP_5363	0.58	-0.2
6,112,521	-		PP_5363	0.58	-0.5
6,112,688	+		PP_5363	0.89	-0.0
6,112,688	+		PP_5363	0.89	+1.6
6,112,689	-		PP_5363	0.89	+0.6
6,112,689	-		PP_5363	0.89	-0.2
6,112,710	-				+1.1
6,112,795	-				-0.8
6,112,845	+				-0.0
6,112,845	+				+0.6
6,112,857	-				+0.4
6,112,876	+				+0.7
6,112,876	+				-1.0
6,112,876	+				+1.2
6,112,877	-				+1.6
6,112,877	-				-0.7
6,112,877	-				-0.6
6,112,896	-				+0.1
6,112,907	+				+0.3
6,112,912	-				+0.3
6,112,937	-				-0.6