Strain Fitness in Pseudomonas putida KT2440 around PP_3287

Experiment: Adaptation in M9 media timecourse 3; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 3
3,720,511	+				+0.6
3,720,512	-				-0.3
3,720,556	-		PP_3286	0.14	+1.3
3,720,603	-		PP_3286	0.19	-0.4
3,720,603	-		PP_3286	0.19	-0.3
3,720,672	+		PP_3286	0.27	+1.6
3,720,673	+		PP_3286	0.27	-0.4
3,720,673	+		PP_3286	0.27	-0.4
3,720,673	+		PP_3286	0.27	+1.6
3,720,674	-		PP_3286	0.27	+1.2
3,720,727	+		PP_3286	0.33	-0.4
3,720,727	+		PP_3286	0.33	+0.6
3,720,729	+		PP_3286	0.33	+0.9
3,720,822	-		PP_3286	0.43	+0.7
3,720,930	+		PP_3286	0.55	+0.6
3,720,959	+		PP_3286	0.58	+1.6
3,721,028	-		PP_3286	0.65	-1.6
3,721,028	-		PP_3286	0.65	-0.5
3,721,038	+		PP_3286	0.66	-0.6
3,721,039	-		PP_3286	0.67	+2.6
3,721,039	-		PP_3286	0.67	-0.2
3,721,465	+				+0.9
3,721,465	+				+0.3
3,721,505	-		PP_3287	0.12	-0.6
3,721,563	+				+0.4
3,721,564	-		PP_3287	0.20	-0.0
3,721,877	+		PP_3287	0.59	-0.2
3,721,878	-		PP_3287	0.59	+0.4
3,721,878	-		PP_3287	0.59	+0.6
3,721,958	+		PP_3287	0.69	-0.2
3,721,958	+		PP_3287	0.69	-0.5
3,721,959	-		PP_3287	0.69	+0.8
3,721,965	+				+1.6
3,721,966	-		PP_3287	0.70	-0.2
3,721,966	-		PP_3287	0.70	-1.1
3,722,033	+		PP_3287	0.79	-0.1
3,722,141	-				-1.4
3,722,141	-				-0.4
3,722,141	-				+0.7
3,722,223	+				-1.7
3,722,254	-		PP_5598	0.19	+0.6
3,722,340	+		PP_5598	0.54	-0.6
3,722,341	-		PP_5598	0.54	+0.9
3,722,376	+		PP_5598	0.68	+0.2
3,722,430	+				+0.3
3,722,444	+				+0.1
3,722,473	+				-0.1
3,722,473	+				+0.0
3,722,474	-				+0.4
3,722,576	+				-0.2
3,722,582	+				-0.4
3,722,675	+				+0.3
3,722,675	+				-0.1
3,722,697	+				+0.1
3,722,697	+				-0.1
3,722,698	-				-0.3
3,722,698	-				-1.5
3,722,698	-				+0.3
3,722,714	-				+0.8
3,722,714	-				+0.1
3,722,717	+				-0.6
3,722,717	+				-0.0
3,722,717	+				-0.6
3,722,717	+				+0.3
3,722,718	-				-0.1
3,722,718	-				+0.1
3,722,718	-				+0.0
3,722,718	-				+0.2
3,722,721	+				+0.2
3,722,804	+				+0.4
3,722,804	+				-0.0
3,722,804	+				-0.4
3,722,804	+				-0.5
3,722,804	+				-0.4
3,722,804	+				-0.5
3,722,934	-		PP_3288	0.20	+0.9
3,722,934	-		PP_3288	0.20	-0.5
3,723,048	+		PP_3288	0.33	+0.1
3,723,049	-		PP_3288	0.33	-0.1
3,723,049	-		PP_3288	0.33	+0.5
3,723,137	-		PP_3288	0.42	+0.7
3,723,162	+		PP_3288	0.45	-0.5
3,723,163	-		PP_3288	0.45	+0.7