Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0982 and Atu0983 are separated by 226 nucleotides Atu0983 and Atu0984 are separated by 136 nucleotides Atu0984 and Atu0985 are separated by 462 nucleotides
Atu0982: Atu0982 - two component sensor kinase, at 974,550 to 976,886
Atu0982
Atu0983: Atu0983 - hypothetical protein, at 977,113 to 977,433
Atu0983
Atu0984: Atu0984 - aminopeptidase N, at 977,570 to 980,218
Atu0984
Atu0985: Atu0985 - permease, at 980,681 to 981,616
Atu0985
Position (kb) 977
978
979
980
981 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 976.752 kb on - strand at 976.752 kb on - strand at 976.752 kb on - strand at 976.998 kb on + strand at 977.032 kb on + strand at 977.085 kb on + strand at 977.085 kb on + strand at 977.085 kb on + strand at 977.130 kb on - strand at 977.134 kb on - strand at 977.163 kb on - strand, within Atu0983 at 977.291 kb on + strand, within Atu0983 at 977.460 kb on + strand at 977.538 kb on + strand at 977.551 kb on - strand at 977.573 kb on + strand at 977.749 kb on - strand at 977.776 kb on - strand at 977.799 kb on + strand at 977.831 kb on - strand at 977.859 kb on - strand, within Atu0984 at 978.032 kb on - strand, within Atu0984 at 978.105 kb on - strand, within Atu0984 at 978.280 kb on - strand, within Atu0984 at 978.324 kb on + strand, within Atu0984 at 978.418 kb on - strand, within Atu0984 at 978.475 kb on - strand, within Atu0984 at 978.544 kb on + strand, within Atu0984 at 978.612 kb on - strand, within Atu0984 at 978.686 kb on + strand, within Atu0984 at 978.703 kb on - strand, within Atu0984 at 978.795 kb on + strand, within Atu0984 at 978.799 kb on + strand, within Atu0984 at 978.799 kb on + strand, within Atu0984 at 978.799 kb on + strand, within Atu0984 at 978.807 kb on - strand, within Atu0984 at 978.830 kb on - strand, within Atu0984 at 979.260 kb on - strand, within Atu0984 at 979.260 kb on - strand, within Atu0984 at 979.520 kb on + strand, within Atu0984 at 979.622 kb on + strand, within Atu0984 at 979.718 kb on + strand, within Atu0984 at 979.851 kb on - strand, within Atu0984 at 979.887 kb on + strand, within Atu0984 at 979.887 kb on + strand, within Atu0984 at 979.979 kb on - strand at 980.002 kb on + strand at 980.069 kb on - strand at 980.071 kb on - strand at 980.111 kb on - strand at 980.182 kb on - strand at 980.383 kb on + strand at 980.391 kb on - strand at 980.592 kb on + strand at 980.594 kb on - strand at 980.621 kb on + strand at 980.695 kb on + strand at 980.726 kb on - strand at 980.825 kb on + strand, within Atu0985 at 980.876 kb on + strand, within Atu0985 at 980.951 kb on - strand, within Atu0985 at 980.997 kb on - strand, within Atu0985 at 981.045 kb on - strand, within Atu0985 at 981.173 kb on - strand, within Atu0985 at 981.186 kb on - strand, within Atu0985
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 976,752 - +0.9 976,752 - +1.0 976,752 - +0.5 976,998 + +0.6 977,032 + -0.2 977,085 + +0.4 977,085 + +0.1 977,085 + -0.9 977,130 - +0.7 977,134 - -0.3 977,163 - Atu0983 0.16 +1.1 977,291 + Atu0983 0.55 +0.5 977,460 + -0.6 977,538 + -0.3 977,551 - +2.5 977,573 + -0.3 977,749 - -0.1 977,776 - -0.2 977,799 + -0.2 977,831 - -0.4 977,859 - Atu0984 0.11 +0.2 978,032 - Atu0984 0.17 -0.6 978,105 - Atu0984 0.20 -0.6 978,280 - Atu0984 0.27 +0.4 978,324 + Atu0984 0.28 +0.1 978,418 - Atu0984 0.32 +2.1 978,475 - Atu0984 0.34 +0.3 978,544 + Atu0984 0.37 +0.5 978,612 - Atu0984 0.39 -0.3 978,686 + Atu0984 0.42 -0.4 978,703 - Atu0984 0.43 -1.7 978,795 + Atu0984 0.46 -0.1 978,799 + Atu0984 0.46 +0.1 978,799 + Atu0984 0.46 +0.2 978,799 + Atu0984 0.46 +0.5 978,807 - Atu0984 0.47 +0.2 978,830 - Atu0984 0.48 -0.4 979,260 - Atu0984 0.64 -1.0 979,260 - Atu0984 0.64 -0.1 979,520 + Atu0984 0.74 -0.0 979,622 + Atu0984 0.77 -0.4 979,718 + Atu0984 0.81 -0.4 979,851 - Atu0984 0.86 +3.4 979,887 + Atu0984 0.87 +2.5 979,887 + Atu0984 0.87 -0.7 979,979 - -2.1 980,002 + -0.7 980,069 - -1.8 980,071 - -0.2 980,111 - -1.4 980,182 - +0.0 980,383 + +0.1 980,391 - -0.2 980,592 + +0.5 980,594 - -0.8 980,621 + -0.5 980,695 + +0.0 980,726 - +1.8 980,825 + Atu0985 0.15 +0.2 980,876 + Atu0985 0.21 -0.3 980,951 - Atu0985 0.29 +0.5 980,997 - Atu0985 0.34 +0.9 981,045 - Atu0985 0.39 +0.7 981,173 - Atu0985 0.53 +2.7 981,186 - Atu0985 0.54 +1.6
Or see this region's nucleotide sequence