Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0823 and Atu0824 are separated by 319 nucleotides Atu0824 and Atu0825 are separated by 108 nucleotides Atu0825 and Atu0826 are separated by 118 nucleotides
Atu0823: Atu0823 - ABC transporter, nucleotide binding/ATPase protein, at 821,122 to 822,162
Atu0823
Atu0824: Atu0824 - hypothetical protein, at 822,482 to 822,823
Atu0824
Atu0825: Atu0825 - quinone oxidoreductase, at 822,932 to 823,915
Atu0825
Atu0826: Atu0826 - hypothetical protein, at 824,034 to 825,845
Atu0826
Position (kb) 822
823
824 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 821.991 kb on + strand, within Atu0823 at 822.053 kb on + strand, within Atu0823 at 822.087 kb on + strand at 822.100 kb on - strand at 822.110 kb on + strand at 822.164 kb on - strand at 822.202 kb on + strand at 822.236 kb on - strand at 822.251 kb on - strand at 822.287 kb on - strand at 822.311 kb on - strand at 822.351 kb on + strand at 822.417 kb on + strand at 822.579 kb on - strand, within Atu0824 at 822.794 kb on - strand at 822.938 kb on - strand at 823.059 kb on + strand, within Atu0825 at 823.059 kb on + strand, within Atu0825 at 823.067 kb on - strand, within Atu0825 at 823.110 kb on + strand, within Atu0825 at 823.362 kb on + strand, within Atu0825 at 823.362 kb on + strand, within Atu0825 at 823.370 kb on - strand, within Atu0825 at 823.417 kb on - strand, within Atu0825 at 823.418 kb on - strand, within Atu0825 at 823.418 kb on - strand, within Atu0825 at 823.473 kb on - strand, within Atu0825 at 823.499 kb on - strand, within Atu0825 at 823.574 kb on - strand, within Atu0825 at 823.577 kb on + strand, within Atu0825 at 823.577 kb on + strand, within Atu0825 at 823.682 kb on - strand, within Atu0825 at 823.738 kb on - strand, within Atu0825 at 823.749 kb on - strand, within Atu0825 at 823.757 kb on - strand, within Atu0825 at 823.860 kb on + strand at 823.917 kb on + strand at 823.917 kb on + strand at 823.929 kb on + strand at 823.937 kb on - strand at 823.954 kb on - strand at 823.998 kb on - strand at 824.186 kb on - strand at 824.214 kb on + strand at 824.252 kb on - strand, within Atu0826 at 824.471 kb on - strand, within Atu0826 at 824.584 kb on + strand, within Atu0826 at 824.599 kb on + strand, within Atu0826 at 824.811 kb on - strand, within Atu0826
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 821,991 + Atu0823 0.83 -0.3 822,053 + Atu0823 0.89 -0.6 822,087 + -0.4 822,100 - +0.2 822,110 + +0.5 822,164 - +1.4 822,202 + +0.4 822,236 - -1.5 822,251 - -0.6 822,287 - +0.0 822,311 - +0.1 822,351 + -0.5 822,417 + +0.2 822,579 - Atu0824 0.28 +2.0 822,794 - -1.2 822,938 - +2.1 823,059 + Atu0825 0.13 +0.4 823,059 + Atu0825 0.13 +0.7 823,067 - Atu0825 0.14 -0.4 823,110 + Atu0825 0.18 +0.7 823,362 + Atu0825 0.44 +2.9 823,362 + Atu0825 0.44 -0.1 823,370 - Atu0825 0.45 -0.3 823,417 - Atu0825 0.49 -0.7 823,418 - Atu0825 0.49 -0.2 823,418 - Atu0825 0.49 -0.6 823,473 - Atu0825 0.55 -0.2 823,499 - Atu0825 0.58 -0.3 823,574 - Atu0825 0.65 +0.7 823,577 + Atu0825 0.66 +0.1 823,577 + Atu0825 0.66 -0.8 823,682 - Atu0825 0.76 +1.3 823,738 - Atu0825 0.82 -0.5 823,749 - Atu0825 0.83 -1.3 823,757 - Atu0825 0.84 +0.5 823,860 + +1.9 823,917 + +0.1 823,917 + +0.5 823,929 + +0.3 823,937 - +5.5 823,954 - +0.2 823,998 - -0.4 824,186 - -0.3 824,214 + +0.7 824,252 - Atu0826 0.12 -0.9 824,471 - Atu0826 0.24 -0.0 824,584 + Atu0826 0.30 -0.4 824,599 + Atu0826 0.31 -0.3 824,811 - Atu0826 0.43 -0.3
Or see this region's nucleotide sequence