Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8082 and Atu0447 are separated by 56 nucleotides Atu0447 and Atu0448 overlap by 4 nucleotides Atu0448 and Atu0449 overlap by 1 nucleotides Atu0449 and Atu0450 are separated by 109 nucleotides Atu0450 and Atu8125 are separated by 244 nucleotides
Atu8082: Atu8082 - hypothetical protein, at 441,917 to 442,468
Atu8082
Atu0447: Atu0447 - hypothetical protein, at 442,525 to 443,106
Atu0447
Atu0448: Atu0448 - hypothetical protein, at 443,103 to 443,396
Atu0448
Atu0449: Atu0449 - hypothetical protein, at 443,396 to 444,616
Atu0449
Atu0450: Atu0450 - transcription antitermination protein, at 444,726 to 445,292
Atu0450
Atu8125: Atu8125 - hypothetical protein, at 445,537 to 446,106
Atu8125
Position (kb) 443
444
445 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 442.729 kb on - strand, within Atu0447 at 442.859 kb on - strand, within Atu0447 at 442.869 kb on + strand, within Atu0447 at 442.956 kb on + strand, within Atu0447 at 443.020 kb on - strand, within Atu0447 at 443.022 kb on + strand, within Atu0447 at 443.058 kb on - strand at 443.191 kb on + strand, within Atu0448 at 443.191 kb on + strand, within Atu0448 at 443.192 kb on - strand, within Atu0448 at 443.293 kb on + strand, within Atu0448 at 443.293 kb on - strand, within Atu0448 at 443.298 kb on + strand, within Atu0448 at 443.336 kb on - strand, within Atu0448 at 443.386 kb on + strand at 443.386 kb on + strand at 443.386 kb on + strand at 443.391 kb on - strand at 443.412 kb on + strand at 443.483 kb on + strand at 443.558 kb on - strand, within Atu0449 at 443.585 kb on + strand, within Atu0449 at 443.713 kb on + strand, within Atu0449 at 443.774 kb on + strand, within Atu0449 at 443.964 kb on - strand, within Atu0449 at 444.008 kb on - strand, within Atu0449 at 444.035 kb on - strand, within Atu0449 at 444.235 kb on - strand, within Atu0449 at 444.240 kb on - strand, within Atu0449 at 444.287 kb on - strand, within Atu0449 at 444.339 kb on - strand, within Atu0449 at 444.339 kb on - strand, within Atu0449 at 444.339 kb on - strand, within Atu0449 at 444.376 kb on - strand, within Atu0449 at 444.376 kb on - strand, within Atu0449 at 444.378 kb on - strand, within Atu0449 at 444.389 kb on + strand, within Atu0449 at 444.401 kb on + strand, within Atu0449 at 444.408 kb on + strand, within Atu0449 at 444.408 kb on - strand, within Atu0449 at 444.409 kb on - strand, within Atu0449 at 444.427 kb on - strand, within Atu0449 at 444.439 kb on + strand, within Atu0449 at 444.464 kb on - strand, within Atu0449 at 444.480 kb on - strand, within Atu0449 at 444.518 kb on - strand at 444.649 kb on + strand at 444.656 kb on + strand at 444.770 kb on - strand at 444.776 kb on + strand at 444.922 kb on + strand, within Atu0450 at 444.932 kb on + strand, within Atu0450 at 444.935 kb on - strand, within Atu0450 at 444.940 kb on - strand, within Atu0450 at 444.940 kb on - strand, within Atu0450 at 444.967 kb on + strand, within Atu0450 at 444.970 kb on - strand, within Atu0450 at 444.977 kb on + strand, within Atu0450 at 444.993 kb on - strand, within Atu0450 at 445.010 kb on + strand, within Atu0450 at 445.010 kb on + strand, within Atu0450 at 445.018 kb on - strand, within Atu0450 at 445.092 kb on - strand, within Atu0450 at 445.099 kb on - strand, within Atu0450 at 445.101 kb on + strand, within Atu0450 at 445.103 kb on + strand, within Atu0450 at 445.111 kb on - strand, within Atu0450 at 445.150 kb on - strand, within Atu0450 at 445.224 kb on - strand, within Atu0450 at 445.227 kb on - strand, within Atu0450 at 445.265 kb on - strand at 445.267 kb on + strand at 445.275 kb on - strand at 445.292 kb on + strand at 445.300 kb on - strand at 445.300 kb on - strand at 445.305 kb on - strand at 445.443 kb on + strand at 445.481 kb on + strand at 445.508 kb on + strand at 445.571 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 442,729 - Atu0447 0.35 -0.9 442,859 - Atu0447 0.57 -0.6 442,869 + Atu0447 0.59 -0.6 442,956 + Atu0447 0.74 +0.1 443,020 - Atu0447 0.85 -0.4 443,022 + Atu0447 0.85 +1.3 443,058 - +2.3 443,191 + Atu0448 0.30 +0.7 443,191 + Atu0448 0.30 +0.6 443,192 - Atu0448 0.30 +0.2 443,293 + Atu0448 0.65 -0.1 443,293 - Atu0448 0.65 +0.2 443,298 + Atu0448 0.66 +0.1 443,336 - Atu0448 0.79 +2.3 443,386 + +0.4 443,386 + +1.0 443,386 + -0.3 443,391 - -0.2 443,412 + +1.4 443,483 + -2.0 443,558 - Atu0449 0.13 -1.8 443,585 + Atu0449 0.15 +0.5 443,713 + Atu0449 0.26 -2.5 443,774 + Atu0449 0.31 -0.8 443,964 - Atu0449 0.47 -0.4 444,008 - Atu0449 0.50 +0.2 444,035 - Atu0449 0.52 +0.8 444,235 - Atu0449 0.69 +0.8 444,240 - Atu0449 0.69 -0.6 444,287 - Atu0449 0.73 -0.7 444,339 - Atu0449 0.77 -0.4 444,339 - Atu0449 0.77 +0.6 444,339 - Atu0449 0.77 +0.6 444,376 - Atu0449 0.80 -0.4 444,376 - Atu0449 0.80 +0.4 444,378 - Atu0449 0.80 -1.3 444,389 + Atu0449 0.81 -0.1 444,401 + Atu0449 0.82 +2.2 444,408 + Atu0449 0.83 +0.7 444,408 - Atu0449 0.83 -0.2 444,409 - Atu0449 0.83 +0.3 444,427 - Atu0449 0.84 -0.8 444,439 + Atu0449 0.85 +0.1 444,464 - Atu0449 0.87 -0.4 444,480 - Atu0449 0.89 +1.1 444,518 - -1.5 444,649 + +1.7 444,656 + +0.5 444,770 - -1.1 444,776 + +0.2 444,922 + Atu0450 0.35 +0.5 444,932 + Atu0450 0.36 +1.1 444,935 - Atu0450 0.37 -0.1 444,940 - Atu0450 0.38 +1.2 444,940 - Atu0450 0.38 -0.2 444,967 + Atu0450 0.43 -0.2 444,970 - Atu0450 0.43 +0.4 444,977 + Atu0450 0.44 -0.8 444,993 - Atu0450 0.47 +1.3 445,010 + Atu0450 0.50 +0.5 445,010 + Atu0450 0.50 -0.0 445,018 - Atu0450 0.51 +2.2 445,092 - Atu0450 0.65 +0.1 445,099 - Atu0450 0.66 +0.1 445,101 + Atu0450 0.66 +2.3 445,103 + Atu0450 0.66 +2.8 445,111 - Atu0450 0.68 +0.3 445,150 - Atu0450 0.75 -0.0 445,224 - Atu0450 0.88 +0.9 445,227 - Atu0450 0.88 +1.2 445,265 - -1.3 445,267 + +0.1 445,275 - +0.1 445,292 + +1.0 445,300 - +0.5 445,300 - +0.5 445,305 - +0.5 445,443 + -1.4 445,481 + -0.4 445,508 + +0.9 445,571 + -0.4
Or see this region's nucleotide sequence