Strain Fitness in Agrobacterium fabrum C58 around Atu0428

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0426 and Atu0427 are separated by 59 nucleotidesAtu0427 and Atu0428 are separated by 30 nucleotidesAtu0428 and Atu0429 are separated by 56 nucleotides Atu0426: Atu0426 - hypothetical protein, at 423,109 to 423,690 Atu0426 Atu0427: Atu0427 - hypothetical protein, at 423,750 to 423,998 Atu0427 Atu0428: Atu0428 - acetylornithine aminotransferase, at 424,029 to 425,228 Atu0428 Atu0429: Atu0429 - ornithine carbamoyltransferase, at 425,285 to 426,202 Atu0429 Position (kb) 424 425 426Strain fitness (log2 ratio) -1 0 1at 423.062 kb on + strandat 423.062 kb on + strandat 423.817 kb on + strand, within Atu0427at 423.825 kb on - strand, within Atu0427at 423.839 kb on - strand, within Atu0427at 423.840 kb on - strand, within Atu0427at 423.853 kb on + strand, within Atu0427at 423.861 kb on - strand, within Atu0427at 423.993 kb on + strandat 424.016 kb on + strandat 426.184 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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423,062 + -0.1
423,062 + -0.1
423,817 + Atu0427 0.27 +0.7
423,825 - Atu0427 0.30 -0.9
423,839 - Atu0427 0.36 -0.5
423,840 - Atu0427 0.36 +0.1
423,853 + Atu0427 0.41 -0.4
423,861 - Atu0427 0.45 +0.2
423,993 + +0.2
424,016 + +0.2
426,184 + -0.1

Or see this region's nucleotide sequence