Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0124 and Atu0125 are separated by 72 nucleotides Atu0125 and Atu0126 are separated by 213 nucleotides Atu0126 and Atu0127 are separated by 82 nucleotides
Atu0124: Atu0124 - hypothetical protein, at 128,724 to 129,041
Atu0124
Atu0125: Atu0125 - peptide methionine sulfoxide reductase, at 129,114 to 129,764
Atu0125
Atu0126: Atu0126 - membrane lipoprotein, at 129,978 to 130,970
Atu0126
Atu0127: Atu0127 - ABC transporter, nucleotide binding/ATPase protein (sugar/ribonucleotide), at 131,053 to 132,558
Atu0127
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 128.987 kb on - strand, within Atu0124 at 128.987 kb on - strand, within Atu0124 at 129.026 kb on - strand at 129.060 kb on - strand at 129.067 kb on + strand at 129.083 kb on - strand at 129.094 kb on - strand at 129.239 kb on + strand, within Atu0125 at 129.239 kb on + strand, within Atu0125 at 129.247 kb on - strand, within Atu0125 at 129.416 kb on + strand, within Atu0125 at 129.424 kb on - strand, within Atu0125 at 129.425 kb on + strand, within Atu0125 at 129.461 kb on + strand, within Atu0125 at 129.461 kb on + strand, within Atu0125 at 129.469 kb on - strand, within Atu0125 at 129.485 kb on + strand, within Atu0125 at 129.521 kb on + strand, within Atu0125 at 129.611 kb on + strand, within Atu0125 at 129.611 kb on + strand, within Atu0125 at 129.619 kb on - strand, within Atu0125 at 129.629 kb on - strand, within Atu0125 at 129.718 kb on - strand at 129.741 kb on + strand at 129.753 kb on + strand at 129.963 kb on + strand at 129.976 kb on - strand at 130.058 kb on + strand at 130.058 kb on + strand at 130.066 kb on - strand at 130.066 kb on - strand at 130.363 kb on + strand, within Atu0126 at 130.465 kb on + strand, within Atu0126 at 130.547 kb on - strand, within Atu0126 at 130.561 kb on + strand, within Atu0126 at 130.569 kb on - strand, within Atu0126 at 130.769 kb on - strand, within Atu0126 at 130.809 kb on - strand, within Atu0126 at 130.860 kb on + strand, within Atu0126 at 130.895 kb on - strand at 130.898 kb on + strand at 130.901 kb on - strand at 131.039 kb on + strand at 131.047 kb on - strand at 131.047 kb on - strand at 131.047 kb on - strand at 131.207 kb on + strand, within Atu0127 at 131.207 kb on + strand, within Atu0127 at 131.225 kb on - strand, within Atu0127 at 131.254 kb on + strand, within Atu0127 at 131.262 kb on - strand, within Atu0127 at 131.295 kb on + strand, within Atu0127 at 131.412 kb on + strand, within Atu0127 at 131.438 kb on + strand, within Atu0127 at 131.465 kb on + strand, within Atu0127 at 131.560 kb on + strand, within Atu0127 at 131.619 kb on + strand, within Atu0127 at 131.619 kb on + strand, within Atu0127 at 131.642 kb on + strand, within Atu0127 at 131.650 kb on - strand, within Atu0127 at 131.699 kb on + strand, within Atu0127 at 131.723 kb on - strand, within Atu0127 at 131.823 kb on - strand, within Atu0127 at 131.852 kb on + strand, within Atu0127 at 131.934 kb on + strand, within Atu0127
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 128,987 - Atu0124 0.83 +0.0 128,987 - Atu0124 0.83 +0.8 129,026 - +0.3 129,060 - -0.3 129,067 + -0.3 129,083 - +0.4 129,094 - +0.1 129,239 + Atu0125 0.19 -0.0 129,239 + Atu0125 0.19 +0.6 129,247 - Atu0125 0.20 -0.1 129,416 + Atu0125 0.46 +0.7 129,424 - Atu0125 0.48 +1.6 129,425 + Atu0125 0.48 -0.9 129,461 + Atu0125 0.53 +0.9 129,461 + Atu0125 0.53 -1.4 129,469 - Atu0125 0.55 +1.3 129,485 + Atu0125 0.57 -0.5 129,521 + Atu0125 0.63 -0.2 129,611 + Atu0125 0.76 +1.4 129,611 + Atu0125 0.76 -0.8 129,619 - Atu0125 0.78 +0.1 129,629 - Atu0125 0.79 +0.5 129,718 - -1.9 129,741 + +0.3 129,753 + +1.3 129,963 + +0.2 129,976 - +1.6 130,058 + +0.8 130,058 + -1.4 130,066 - -0.7 130,066 - +0.5 130,363 + Atu0126 0.39 +0.2 130,465 + Atu0126 0.49 +0.5 130,547 - Atu0126 0.57 +0.2 130,561 + Atu0126 0.59 -0.1 130,569 - Atu0126 0.60 -0.1 130,769 - Atu0126 0.80 -1.2 130,809 - Atu0126 0.84 +0.5 130,860 + Atu0126 0.89 +6.5 130,895 - +0.1 130,898 + -0.2 130,901 - +0.1 131,039 + +0.7 131,047 - +0.3 131,047 - +0.9 131,047 - -0.4 131,207 + Atu0127 0.10 -0.1 131,207 + Atu0127 0.10 +0.7 131,225 - Atu0127 0.11 +0.2 131,254 + Atu0127 0.13 +0.1 131,262 - Atu0127 0.14 -1.6 131,295 + Atu0127 0.16 +0.1 131,412 + Atu0127 0.24 -0.6 131,438 + Atu0127 0.26 -0.3 131,465 + Atu0127 0.27 -0.2 131,560 + Atu0127 0.34 -0.2 131,619 + Atu0127 0.38 +0.4 131,619 + Atu0127 0.38 +0.7 131,642 + Atu0127 0.39 -0.7 131,650 - Atu0127 0.40 +0.9 131,699 + Atu0127 0.43 +1.1 131,723 - Atu0127 0.44 +0.2 131,823 - Atu0127 0.51 +0.2 131,852 + Atu0127 0.53 -0.4 131,934 + Atu0127 0.58 -0.8
Or see this region's nucleotide sequence