Strain Fitness in Escherichia coli BW25113 around b3788

Experiment: LB Aerobic with Doxycycline hyclate 0.00000625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB Aerobic with Doxycycline hyclate 0.00000625 mM
3,969,557	+	rffD	b3787	0.22	-1.9
3,969,570	-	rffD	b3787	0.23	-1.1
3,969,629	+	rffD	b3787	0.27	-0.1
3,969,629	+	rffD	b3787	0.27	-0.1
3,969,631	+	rffD	b3787	0.28	-1.9
3,969,631	+	rffD	b3787	0.28	-1.4
3,969,682	+	rffD	b3787	0.32	-2.3
3,969,685	-	rffD	b3787	0.32	-3.1
3,969,735	+	rffD	b3787	0.36	-0.5
3,969,740	+	rffD	b3787	0.36	+0.2
3,969,743	-	rffD	b3787	0.36	-1.7
3,969,752	+	rffD	b3787	0.37	-0.5
3,969,767	+	rffD	b3787	0.38	-0.8
3,969,773	+	rffD	b3787	0.39	-0.8
3,969,773	+	rffD	b3787	0.39	-2.5
3,969,775	-	rffD	b3787	0.39	-1.5
3,969,781	-	rffD	b3787	0.39	-1.5
3,969,785	-	rffD	b3787	0.40	-3.0
3,969,794	+	rffD	b3787	0.40	-1.2
3,969,890	-	rffD	b3787	0.48	-1.1
3,969,890	-	rffD	b3787	0.48	-1.5
3,969,911	+	rffD	b3787	0.50	-0.1
3,969,911	+	rffD	b3787	0.50	-1.8
3,969,912	+	rffD	b3787	0.50	-1.9
3,969,912	+	rffD	b3787	0.50	-1.1
3,969,919	-	rffD	b3787	0.50	-0.8
3,969,919	-	rffD	b3787	0.50	-1.3
3,970,006	+	rffD	b3787	0.57	-1.3
3,970,040	+	rffD	b3787	0.60	+0.3
3,970,040	-	rffD	b3787	0.60	+0.2
3,970,053	+	rffD	b3787	0.61	+1.5
3,970,058	+	rffD	b3787	0.61	-1.3
3,970,060	-	rffD	b3787	0.62	-1.6
3,970,071	-	rffD	b3787	0.62	-2.2
3,970,085	+	rffD	b3787	0.63	-0.6
3,970,085	-	rffD	b3787	0.63	-1.9
3,970,093	-	rffD	b3787	0.64	+0.5
3,970,098	+	rffD	b3787	0.65	-3.2
3,970,108	+	rffD	b3787	0.65	-0.1
3,970,130	+	rffD	b3787	0.67	-2.0
3,970,160	+	rffD	b3787	0.69	-0.3
3,970,160	+	rffD	b3787	0.69	-0.8
3,970,188	+	rffD	b3787	0.72	-3.5
3,970,211	-	rffD	b3787	0.73	-1.7
3,970,211	-	rffD	b3787	0.73	-0.6
3,970,222	+	rffD	b3787	0.74	-1.5
3,970,222	+	rffD	b3787	0.74	-1.3
3,970,256	+	rffD	b3787	0.77	-0.8
3,970,256	+	rffD	b3787	0.77	-0.8
3,970,264	-	rffD	b3787	0.78	-1.5
3,970,316	+	rffD	b3787	0.82	-1.6
3,970,324	-	rffD	b3787	0.82	-1.9
3,970,324	-	rffD	b3787	0.82	-2.6
3,970,331	-	rffD	b3787	0.83	-0.8
3,970,341	-	rffD	b3787	0.84	-1.4
3,970,372	+	rffD	b3787	0.86	+0.0
3,970,373	-	rffD	b3787	0.86	-2.1
3,970,406	+	rffD	b3787	0.89	-1.4
3,970,406	+	rffD	b3787	0.89	-1.1
3,970,431	-				-1.1
3,970,442	-				-1.3
3,970,466	+				-1.6
3,970,466	+				-0.6
3,970,466	+				-1.8
3,970,512	+				-1.6
3,970,512	+				-2.5
3,970,512	+				-1.9
3,970,525	-				-0.4
3,970,532	-				+0.5
3,970,534	+				-2.3
3,970,534	+				-1.2
3,970,534	+				-1.1
3,970,534	+				-1.8
3,970,598	+				-2.0
3,970,603	-				-0.2
3,970,637	-				+0.9
3,970,663	+	rffG	b3788	0.11	-1.5
3,970,665	-	rffG	b3788	0.11	+0.2
3,970,676	+	rffG	b3788	0.12	-1.3
3,970,693	-	rffG	b3788	0.14	+0.7
3,970,693	-	rffG	b3788	0.14	+0.3
3,970,732	+	rffG	b3788	0.18	-1.4
3,970,737	+	rffG	b3788	0.18	-1.1
3,970,772	-	rffG	b3788	0.21	-0.5
3,970,784	+	rffG	b3788	0.22	-1.3
3,970,784	+	rffG	b3788	0.22	-1.3
3,970,784	-	rffG	b3788	0.22	+0.4
3,970,811	+	rffG	b3788	0.25	-1.8
3,970,820	-	rffG	b3788	0.26	-0.8
3,970,820	-	rffG	b3788	0.26	-1.3
3,970,823	-	rffG	b3788	0.26	-0.1
3,970,830	-	rffG	b3788	0.27	+0.3
3,970,856	+	rffG	b3788	0.29	-2.3
3,970,866	-	rffG	b3788	0.30	-0.5
3,970,875	-	rffG	b3788	0.31	+0.1
3,970,875	-	rffG	b3788	0.31	+0.6
3,970,876	-	rffG	b3788	0.31	+0.3
3,970,953	+	rffG	b3788	0.38	-1.6
3,970,953	+	rffG	b3788	0.38	-2.5
3,970,960	-	rffG	b3788	0.39	+0.7
3,970,960	-	rffG	b3788	0.39	-1.3
3,970,963	+	rffG	b3788	0.39	-0.8
3,971,010	-	rffG	b3788	0.44	-0.1
3,971,010	-	rffG	b3788	0.44	+0.4
3,971,012	+	rffG	b3788	0.44	-2.5
3,971,044	-	rffG	b3788	0.47	-0.3
3,971,049	+	rffG	b3788	0.47	-1.6
3,971,066	+	rffG	b3788	0.49	-1.5
3,971,066	+	rffG	b3788	0.49	-0.5
3,971,074	-	rffG	b3788	0.50	+0.3
3,971,080	-	rffG	b3788	0.50	+1.5
3,971,110	-	rffG	b3788	0.53	+0.9
3,971,114	+	rffG	b3788	0.53	-1.7
3,971,174	+	rffG	b3788	0.59	-3.0
3,971,190	+	rffG	b3788	0.60	-4.7
3,971,255	-	rffG	b3788	0.66	+0.4
3,971,260	-	rffG	b3788	0.67	+1.7
3,971,260	-	rffG	b3788	0.67	+0.0
3,971,260	-	rffG	b3788	0.67	+0.4
3,971,260	-	rffG	b3788	0.67	-0.5
3,971,260	-	rffG	b3788	0.67	+1.0
3,971,260	-	rffG	b3788	0.67	+0.7
3,971,338	+	rffG	b3788	0.74	-1.6
3,971,359	+	rffG	b3788	0.76	-2.1
3,971,383	+	rffG	b3788	0.78	-2.2
3,971,395	+	rffG	b3788	0.80	-3.2
3,971,395	+	rffG	b3788	0.80	-2.3
3,971,403	-				-0.5
3,971,403	-	rffG	b3788	0.80	-0.3
3,971,421	+	rffG	b3788	0.82	-3.8
3,971,436	+	rffG	b3788	0.83	-0.9
3,971,436	+	rffG	b3788	0.83	-1.1
3,971,446	+	rffG	b3788	0.84	-1.9
3,971,449	-	rffG	b3788	0.85	+0.3
3,971,534	+				+0.5
3,971,540	+				-1.1
3,971,573	-				+0.7
3,971,573	-				-0.6
3,971,581	-				+0.1
3,971,587	-				+0.8
3,971,587	-				-0.5
3,971,593	+				-1.9
3,971,598	+				-1.5
3,971,598	+				-1.2
3,971,601	-				-2.6
3,971,656	+				-2.3
3,971,705	-				-0.3
3,971,729	+	rffH	b3789	0.11	-1.5
3,971,768	-	rffH	b3789	0.16	-0.3
3,971,775	+	rffH	b3789	0.16	-2.2
3,971,775	+	rffH	b3789	0.16	-3.1
3,971,820	+	rffH	b3789	0.21	-3.5
3,971,825	+	rffH	b3789	0.22	-2.1
3,971,838	-	rffH	b3789	0.23	+0.4
3,971,878	-	rffH	b3789	0.28	-1.6
3,971,878	-	rffH	b3789	0.28	+0.4
3,971,883	+	rffH	b3789	0.29	-1.0
3,971,951	-	rffH	b3789	0.36	+0.8
3,971,951	-	rffH	b3789	0.36	+1.3
3,971,967	+	rffH	b3789	0.38	-0.8
3,971,980	+	rffH	b3789	0.40	-2.1
3,971,980	+	rffH	b3789	0.40	+1.5
3,972,063	-	rffH	b3789	0.49	+0.3
3,972,161	+	rffH	b3789	0.60	-2.9
3,972,168	+	rffH	b3789	0.61	-2.7
3,972,168	+	rffH	b3789	0.61	-1.6
3,972,178	+	rffH	b3789	0.62	-2.2
3,972,210	+	rffH	b3789	0.66	-2.4
3,972,244	-	rffH	b3789	0.70	-0.2
3,972,256	+	rffH	b3789	0.71	-1.8
3,972,315	+	rffH	b3789	0.78	-2.3
3,972,315	+	rffH	b3789	0.78	-3.0
3,972,334	+	rffH	b3789	0.80	-2.6
3,972,344	-	rffH	b3789	0.81	+1.0
3,972,344	-	rffH	b3789	0.81	+0.5
3,972,357	+	rffH	b3789	0.82	-3.3
3,972,372	-	rffH	b3789	0.84	-0.7
3,972,387	-	rffH	b3789	0.86	+0.1
3,972,387	-	rffH	b3789	0.86	-0.3
3,972,423	+	rffH	b3789	0.90	-1.4
3,972,423	+	rffH	b3789	0.90	-2.4
3,972,423	+	rffH	b3789	0.90	-0.9
3,972,423	+	rffH	b3789	0.90	-1.9
3,972,423	+	rffH	b3789	0.90	-3.4
3,972,431	-				+0.4
3,972,431	-				+0.7
3,972,431	-				+1.1
3,972,448	-				-0.2
3,972,448	-				-0.1
3,972,449	+				-2.8
3,972,449	+				-1.7
3,972,466	+				-2.4
3,972,470	+				-3.1
3,972,488	-				-0.5
3,972,504	-				+0.5
3,972,504	-				+0.5
3,972,509	-				+0.4
3,972,542	-				+1.5
3,972,593	-	rffC	b3790	0.15	-2.1
3,972,607	-	rffC	b3790	0.17	+1.5