Strain Fitness in Pseudomonas putida KT2440 around PP_5589

Experiment: Adaptation in M9 media timecourse 3; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 2
3,577,785	-		PP_3158	0.27	+0.4
3,577,805	+		PP_3158	0.30	-0.2
3,577,805	+		PP_3158	0.30	+0.2
3,577,943	+		PP_3158	0.48	-0.8
3,577,943	+		PP_3158	0.48	+0.5
3,577,991	+		PP_3158	0.55	+0.4
3,578,043	-		PP_3158	0.62	-0.2
3,578,043	-		PP_3158	0.62	+0.4
3,578,043	-		PP_3158	0.62	+1.0
3,578,269	-				+0.3
3,578,322	-				-0.0
3,578,360	-				+0.3
3,578,450	+				-0.5
3,578,451	-				+0.1
3,578,451	-				+0.0
3,578,451	-				+0.6
3,578,451	-				-0.2
3,578,487	-				-1.1
3,578,570	-				-0.7
3,578,570	-				+1.4
3,578,570	-				+0.1
3,578,622	+				-0.5
3,578,623	-				-0.7
3,578,623	-				+0.1
3,578,705	-				-0.4
3,578,774	+		PP_5589	0.22	+2.2
3,578,775	-		PP_5589	0.22	-0.8
3,578,777	+		PP_5589	0.22	-0.7
3,578,830	-		PP_5589	0.31	-0.7
3,579,040	-		PP_5589	0.67	-0.8
3,579,113	+		PP_5589	0.80	-0.5
3,579,141	+		PP_5589	0.84	-1.4
3,579,148	-				-0.4
3,579,329	-				+0.1
3,579,346	-				+0.4
3,579,352	+				-0.2
3,579,359	+				+0.2
3,579,383	-				+0.6
3,579,426	-				-0.7
3,579,426	-				-1.6
3,579,426	-				-0.3
3,579,512	+				-0.1
3,579,513	-				+0.1
3,579,548	+				+0.9
3,579,600	+				-1.2
3,579,601	-				+0.3
3,579,619	+				-0.2
3,579,629	+				-0.1
3,579,630	-				-1.6
3,579,725	+				+0.3
3,579,725	+				+1.4
3,579,725	+				+0.4
3,579,726	-				+0.1
3,579,726	-				-0.2
3,579,780	+				-0.6
3,579,821	+				-0.2
3,579,822	-				+0.7
3,579,896	-				+0.1
3,579,896	-				+1.3
3,579,896	-				+1.0
3,579,896	-				+0.3
3,579,920	+				-1.2
3,579,920	+				-0.3
3,579,921	-				+0.2
3,579,921	-				+0.3
3,579,935	+				+0.7
3,579,935	+				-1.0
3,579,936	-				-1.0
3,579,952	-				-0.2
3,579,952	-				-0.1
3,579,952	-				-0.4
3,579,952	-				+0.5
3,579,952	-				-0.6
3,580,047	-		PP_3159	0.19	-2.0
3,580,047	-		PP_3159	0.19	+0.2
3,580,091	+		PP_3159	0.24	+0.8
3,580,092	-		PP_3159	0.24	+0.4
3,580,092	-		PP_3159	0.24	+0.1
3,580,138	+		PP_3159	0.28	+0.6
3,580,138	+		PP_3159	0.28	+0.0
3,580,139	-		PP_3159	0.29	-0.5
3,580,209	-		PP_3159	0.36	-0.5