Strain Fitness in Pseudomonas putida KT2440 around PP_5390

Experiment: Adaptation in M9 media timecourse 3; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 2
6,144,459	+				+0.2
6,144,459	+				+0.4
6,144,459	+				-1.7
6,144,491	+				+0.0
6,144,491	+				+0.4
6,144,492	-				+0.3
6,144,517	+				-0.0
6,144,551	+				-0.7
6,144,551	+				+0.6
6,144,551	+				-2.4
6,144,551	+				+0.5
6,144,551	+				+0.1
6,144,555	+				-0.2
6,144,555	+				-0.9
6,144,555	+				+1.4
6,144,555	+				-1.1
6,144,555	+				+0.3
6,144,555	+				+0.3
6,144,556	-				+0.1
6,144,556	-				-0.6
6,144,556	-				+0.0
6,144,556	-				+3.0
6,144,713	+		PP_5735	0.78	-0.5
6,144,714	-		PP_5735	0.79	+0.8
6,144,718	+		PP_5735	0.81	-2.3
6,144,718	+		PP_5735	0.81	-1.0
6,144,718	+		PP_5735	0.81	-0.6
6,144,719	-		PP_5735	0.81	-0.6
6,144,760	+				+0.5
6,144,760	+				-0.9
6,144,760	+				-0.3
6,144,760	+				+0.2
6,144,761	-				-0.1
6,144,761	-				+0.3
6,144,761	-				-0.9
6,144,774	+				-2.2
6,144,775	-				+0.1
6,144,775	-				+0.3
6,144,781	+				+0.5
6,144,781	+				-0.4
6,144,781	+				+0.2
6,144,782	-				-0.4
6,144,782	-				+0.1
6,144,788	+				+0.8
6,144,788	+				+0.1
6,144,788	+				-0.2
6,144,788	+				-1.4
6,144,789	-				-0.9
6,144,830	+				+0.7
6,144,830	+				-0.1
6,144,831	-				-0.2
6,144,831	-				+1.8
6,144,831	-				+0.8
6,144,837	-				-0.6
6,144,845	+				+0.1
6,144,847	+		PP_5389	0.10	-0.2
6,144,847	+		PP_5389	0.10	-0.2
6,144,847	+		PP_5389	0.10	+0.2
6,144,847	+		PP_5389	0.10	-0.7
6,144,847	+		PP_5389	0.10	+0.8
6,144,847	+		PP_5389	0.10	+1.2
6,144,848	-		PP_5389	0.10	+0.2
6,144,848	-		PP_5389	0.10	+0.1
6,144,848	-		PP_5389	0.10	-0.0
6,144,848	-		PP_5389	0.10	-0.2
6,144,856	+		PP_5389	0.12	-0.2
6,144,913	+		PP_5389	0.20	+0.1
6,144,913	+		PP_5389	0.20	+1.0
6,144,914	-		PP_5389	0.20	+0.1
6,144,914	-		PP_5389	0.20	-1.6
6,145,003	+		PP_5389	0.34	+0.9
6,145,004	-		PP_5389	0.34	+1.4
6,145,004	-		PP_5389	0.34	+1.4
6,145,004	-		PP_5389	0.34	+0.2
6,145,028	-		PP_5389	0.38	-1.1
6,145,069	+		PP_5389	0.44	-0.1
6,145,069	+		PP_5389	0.44	-0.1
6,145,069	+		PP_5389	0.44	+0.0
6,145,069	+		PP_5389	0.44	+0.4
6,145,069	+		PP_5389	0.44	+0.2
6,145,071	+		PP_5389	0.44	+0.6
6,145,071	+		PP_5389	0.44	-1.0
6,145,071	+		PP_5389	0.44	+0.5
6,145,072	-		PP_5389	0.44	-0.3
6,145,072	-		PP_5389	0.44	+0.3
6,145,072	-		PP_5389	0.44	+0.9
6,145,072	-		PP_5389	0.44	-1.8
6,145,072	-		PP_5389	0.44	-0.2
6,145,072	-		PP_5389	0.44	-0.4
6,145,072	-		PP_5389	0.44	+0.1
6,145,072	-		PP_5389	0.44	+0.5
6,145,072	-		PP_5389	0.44	+1.0
6,145,099	+		PP_5389	0.48	-0.3
6,145,100	-		PP_5389	0.48	-1.8
6,145,100	-		PP_5389	0.48	-0.3
6,145,119	+		PP_5389	0.51	+0.2
6,145,119	+		PP_5389	0.51	-1.3
6,145,119	+		PP_5389	0.51	+0.1
6,145,119	+		PP_5389	0.51	+1.2
6,145,120	-		PP_5389	0.52	+0.4
6,145,123	+		PP_5389	0.52	-0.7
6,145,123	+		PP_5389	0.52	-0.6
6,145,124	-		PP_5389	0.52	-0.4
6,145,124	-		PP_5389	0.52	-0.1
6,145,124	-		PP_5389	0.52	-0.4
6,145,255	+		PP_5389	0.72	-0.1
6,145,255	+		PP_5389	0.72	-0.5
6,145,256	-		PP_5389	0.72	+0.4
6,145,276	+		PP_5389	0.75	-0.4
6,145,277	-		PP_5389	0.75	-0.6
6,145,277	-		PP_5389	0.75	+0.2
6,145,277	-		PP_5389	0.75	-0.6
6,145,277	-		PP_5389	0.75	+0.0
6,145,277	-		PP_5389	0.75	-0.0
6,145,277	-		PP_5389	0.75	+0.8
6,145,462	+				-1.1
6,145,463	-				-0.9
6,145,569	+		PP_5390	0.48	-0.3
6,145,569	+		PP_5390	0.48	-0.0
6,145,569	+		PP_5390	0.48	-0.2
6,145,570	-		PP_5390	0.49	-0.7
6,145,570	-		PP_5390	0.49	-0.3
6,145,570	-		PP_5390	0.49	-1.0
6,145,617	+		PP_5390	0.66	-1.6
6,145,637	+		PP_5390	0.73	-1.1
6,145,638	-		PP_5390	0.73	-0.3
6,145,712	-				+0.7
6,145,712	-				-0.3
6,145,929	-		PP_5391	0.33	-0.6
6,145,929	-		PP_5391	0.33	-0.4
6,145,929	-		PP_5391	0.33	-0.9
6,145,929	-		PP_5391	0.33	-1.0
6,146,204	+		PP_5391	0.80	-0.7
6,146,204	+		PP_5391	0.80	+0.7
6,146,204	+		PP_5391	0.80	-0.0
6,146,205	-		PP_5391	0.80	+0.8
6,146,205	-		PP_5391	0.80	-0.7
6,146,214	-		PP_5391	0.82	-0.6
6,146,215	+		PP_5391	0.82	+1.2
6,146,215	+		PP_5391	0.82	-0.0
6,146,216	-		PP_5391	0.82	-0.8
6,146,216	-		PP_5391	0.82	-0.4
6,146,330	-				-0.7
6,146,381	+				+0.3
6,146,381	+				+0.0
6,146,381	+				+0.5
6,146,381	+				+0.7
6,146,382	-				-0.6
6,146,387	+				-0.5
6,146,388	-				+0.1
6,146,400	-				-1.1
6,146,412	-				-0.4
6,146,424	+				+0.2
6,146,425	-				+0.4
6,146,425	-				-0.6
6,146,425	-				+0.3
6,146,442	-		PP_5392	0.11	-0.2
6,146,458	+		PP_5392	0.13	-0.4
6,146,459	-		PP_5392	0.13	-0.0
6,146,459	-		PP_5392	0.13	-0.0
6,146,459	-		PP_5392	0.13	-0.1
6,146,526	-		PP_5392	0.19	+0.5
6,146,526	-		PP_5392	0.19	+0.4
6,146,537	+		PP_5392	0.20	+0.1
6,146,538	-		PP_5392	0.21	+0.3
6,146,539	+		PP_5392	0.21	+0.4
6,146,541	+		PP_5392	0.21	-0.0
6,146,541	+		PP_5392	0.21	-0.6
6,146,542	-		PP_5392	0.21	-1.2
6,146,542	-		PP_5392	0.21	-0.4
6,146,542	-		PP_5392	0.21	-0.0
6,146,542	-		PP_5392	0.21	-0.3
6,146,593	+		PP_5392	0.26	-0.1
6,146,594	-		PP_5392	0.26	-0.2
6,146,594	-		PP_5392	0.26	-0.8
6,146,594	-		PP_5392	0.26	-1.5