Strain Fitness in Pseudomonas putida KT2440 around PP_5246

Experiment: Adaptation in M9 media timecourse 3; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 2
5,985,921	+		PP_5245	0.19	-0.8
5,985,921	+		PP_5245	0.19	+0.4
5,985,995	+		PP_5245	0.26	+0.7
5,985,996	-		PP_5245	0.27	-1.2
5,986,139	+		PP_5245	0.41	-0.0
5,986,196	+		PP_5245	0.47	+0.7
5,986,302	+		PP_5245	0.58	+1.2
5,986,302	+		PP_5245	0.58	+0.0
5,986,303	-		PP_5245	0.58	+0.6
5,986,303	-		PP_5245	0.58	-0.2
5,986,303	-		PP_5245	0.58	+0.1
5,986,311	+		PP_5245	0.58	-1.2
5,986,311	+		PP_5245	0.58	-0.4
5,986,312	-		PP_5245	0.59	-0.4
5,986,412	+		PP_5245	0.69	-0.2
5,986,412	+		PP_5245	0.69	+0.5
5,986,412	+		PP_5245	0.69	-1.7
5,986,412	+		PP_5245	0.69	-0.6
5,986,413	-		PP_5245	0.69	-0.3
5,986,413	-		PP_5245	0.69	+0.5
5,986,414	+		PP_5245	0.69	-0.1
5,986,414	+		PP_5245	0.69	+0.3
5,986,414	+		PP_5245	0.69	+0.1
5,986,532	+		PP_5245	0.81	+0.4
5,986,532	+		PP_5245	0.81	+0.3
5,986,533	-		PP_5245	0.81	+0.5
5,986,558	+		PP_5245	0.83	-1.3
5,986,647	+				-0.3
5,986,682	+				+0.3
5,986,759	+				-0.4
5,986,759	+				+0.3
5,986,759	+				+0.2
5,986,760	-				+0.5
5,986,854	+				+0.2
5,986,855	-				+0.0
5,986,910	+				-0.3
5,987,025	-				+0.2
5,987,490	+		PP_5246	0.32	+0.6
5,987,490	+		PP_5246	0.32	+0.5
5,987,491	-		PP_5246	0.32	+1.3
5,987,491	-		PP_5246	0.32	+0.4
5,987,529	-		PP_5246	0.34	+0.9
5,987,585	-		PP_5246	0.37	-0.8
5,987,604	+		PP_5246	0.38	+1.4
5,987,604	+		PP_5246	0.38	+1.0
5,987,605	-		PP_5246	0.38	-1.6
5,987,999	+		PP_5246	0.60	+0.6
5,987,999	+		PP_5246	0.60	+0.6
5,987,999	+		PP_5246	0.60	-0.2
5,988,000	-		PP_5246	0.60	+0.5
5,988,023	-		PP_5246	0.62	+0.3
5,988,113	+		PP_5246	0.67	-1.2
5,988,114	-		PP_5246	0.67	-0.8
5,988,114	-		PP_5246	0.67	+0.1
5,988,134	-		PP_5246	0.68	+0.1
5,988,281	+		PP_5246	0.76	+0.6
5,988,338	+		PP_5246	0.79	+0.2
5,988,379	+		PP_5246	0.82	+0.4
5,988,497	+		PP_5246	0.88	+0.2
5,988,498	-		PP_5246	0.88	-1.3
5,988,498	-		PP_5246	0.88	+0.8
5,988,581	-				-0.3
5,988,735	+				-0.0
5,988,735	+				+0.3
5,988,735	+				-1.0
5,988,736	-				+0.1
5,988,780	-				+0.4
5,988,780	-				-0.2
5,988,780	-				-0.1
5,988,791	+				-0.2
5,988,791	+				+0.6
5,988,791	+				-0.3
5,988,792	-				-0.5
5,988,811	+				+0.2
5,988,811	+				-0.6
5,988,811	+				+0.7
5,988,867	-				+0.1
5,988,923	-				+0.5
5,988,923	-				+0.3
5,988,923	-				+0.6
5,989,076	+				-0.1
5,989,094	+				-1.0
5,989,095	-				-0.3
5,989,095	-				-0.1
5,989,141	+				+0.7
5,989,141	+				-0.7
5,989,141	+				-0.4
5,989,142	-				-0.3
5,989,145	-				-0.5
5,989,146	+				+1.4
5,989,146	+				+0.1
5,989,147	-				-1.2
5,989,195	+				-1.1
5,989,196	-				+0.4
5,989,264	+				+0.2
5,989,477	+		PP_5247	0.47	-0.4
5,989,478	-		PP_5247	0.47	-0.6
5,989,533	+		PP_5247	0.61	+0.6
5,989,534	-		PP_5247	0.61	-0.9
5,989,534	-		PP_5247	0.61	-0.8
5,989,534	-		PP_5247	0.61	-0.3
5,989,548	+		PP_5247	0.65	+0.4
5,989,549	-		PP_5247	0.65	-0.6
5,989,549	-		PP_5247	0.65	+0.1
5,989,560	+		PP_5247	0.68	+0.5
5,989,561	-		PP_5247	0.68	+0.2