Strain Fitness in Pseudomonas putida KT2440 around PP_5051

Experiment: Adaptation in M9 media timecourse 3; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 2
5,758,093	+				+0.8
5,758,116	+				-0.2
5,758,318	-				-0.2
5,758,324	+				-1.9
5,758,325	-				+0.2
5,758,325	-				+0.4
5,758,325	-				-0.9
5,758,351	-				-0.8
5,758,379	-				-0.0
5,758,411	+				-0.2
5,758,411	+				+0.4
5,758,411	+				-0.6
5,758,438	-				-0.1
5,758,438	-				-1.2
5,758,438	-				+0.1
5,758,439	+				-0.9
5,758,440	-				+0.4
5,758,467	+				+0.2
5,758,468	-				+0.5
5,758,496	-				-0.6
5,758,612	-		PP_5051	0.27	-0.9
5,758,796	+		PP_5051	0.69	-0.5
5,758,821	+		PP_5051	0.75	-0.4
5,758,992	-		PP_5052	0.16	+0.9
5,759,089	+		PP_5052	0.36	+0.4
5,759,164	-		PP_5052	0.52	+0.1
5,759,335	-		PP_5052	0.88	-0.2
5,759,353	+				+0.7
5,759,354	-				-0.2
5,759,354	-				-1.6
5,759,354	-				-0.2
5,759,354	-				-0.2
5,759,354	-				-0.0
5,759,433	+				+0.4
5,759,477	+				-0.2
5,759,545	-				+0.1
5,759,549	-				+0.2
5,759,549	-				-0.9
5,759,558	+				+0.5
5,759,559	-				+0.4
5,759,559	-				+0.4
5,759,582	+				-1.0
5,759,602	+		PP_5053	0.11	-0.3
5,759,603	-		PP_5053	0.12	-1.3
5,759,766	-		PP_5053	0.45	+1.4