Strain Fitness in Pseudomonas putida KT2440 around PP_4737

Experiment: Adaptation in M9 media timecourse 3; day 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4736 and PP_4737 are separated by 75 nucleotidesPP_4737 and PP_4738 are separated by 319 nucleotides PP_4736: PP_4736 - L-lactate dehydrogenase, at 5,385,270 to 5,386,415 _4736 PP_4737: PP_4737 - D-lactate dehydrogenase, at 5,386,491 to 5,389,301 _4737 PP_4738: PP_4738 - conserved exported protein of unknown function, at 5,389,621 to 5,389,911 _4738 Position (kb) 5386 5387 5388 5389 5390Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5385.519 kb on + strand, within PP_4736at 5385.519 kb on + strand, within PP_4736at 5385.520 kb on - strand, within PP_4736at 5385.520 kb on - strand, within PP_4736at 5385.654 kb on + strand, within PP_4736at 5385.654 kb on + strand, within PP_4736at 5385.654 kb on + strand, within PP_4736at 5385.654 kb on + strand, within PP_4736at 5385.654 kb on + strand, within PP_4736at 5385.654 kb on + strand, within PP_4736at 5385.654 kb on + strand, within PP_4736at 5385.654 kb on + strand, within PP_4736at 5385.654 kb on + strand, within PP_4736at 5385.655 kb on - strand, within PP_4736at 5385.655 kb on - strand, within PP_4736at 5385.655 kb on - strand, within PP_4736at 5385.655 kb on - strand, within PP_4736at 5385.655 kb on - strand, within PP_4736at 5385.655 kb on - strand, within PP_4736at 5385.655 kb on - strand, within PP_4736at 5385.655 kb on - strand, within PP_4736at 5385.655 kb on - strand, within PP_4736at 5385.655 kb on - strand, within PP_4736at 5385.655 kb on - strand, within PP_4736at 5385.658 kb on + strand, within PP_4736at 5385.658 kb on + strand, within PP_4736at 5385.658 kb on + strand, within PP_4736at 5385.659 kb on - strand, within PP_4736at 5385.659 kb on - strand, within PP_4736at 5385.898 kb on - strand, within PP_4736at 5385.898 kb on - strand, within PP_4736at 5385.927 kb on + strand, within PP_4736at 5385.927 kb on + strand, within PP_4736at 5385.927 kb on + strand, within PP_4736at 5385.928 kb on - strand, within PP_4736at 5385.928 kb on - strand, within PP_4736at 5386.246 kb on + strand, within PP_4736at 5386.246 kb on + strand, within PP_4736at 5386.246 kb on + strand, within PP_4736at 5386.247 kb on - strand, within PP_4736at 5386.269 kb on + strand, within PP_4736at 5386.269 kb on + strand, within PP_4736at 5386.270 kb on - strand, within PP_4736at 5386.270 kb on - strandat 5386.455 kb on + strandat 5386.455 kb on + strandat 5386.455 kb on + strandat 5386.455 kb on + strandat 5386.455 kb on + strandat 5386.965 kb on + strand, within PP_4737at 5386.965 kb on + strand, within PP_4737at 5386.965 kb on + strand, within PP_4737at 5386.965 kb on + strand, within PP_4737at 5386.965 kb on + strand, within PP_4737at 5386.965 kb on + strand, within PP_4737at 5386.966 kb on - strand, within PP_4737at 5386.966 kb on - strand, within PP_4737at 5387.143 kb on - strand, within PP_4737at 5387.191 kb on - strand, within PP_4737at 5387.269 kb on - strand, within PP_4737at 5387.269 kb on - strand, within PP_4737at 5387.381 kb on - strand, within PP_4737at 5387.443 kb on + strand, within PP_4737at 5387.444 kb on - strand, within PP_4737at 5387.596 kb on - strand, within PP_4737at 5387.596 kb on - strand, within PP_4737at 5387.751 kb on + strand, within PP_4737at 5387.751 kb on + strand, within PP_4737at 5387.807 kb on + strand, within PP_4737at 5387.971 kb on - strand, within PP_4737at 5387.971 kb on - strand, within PP_4737at 5388.056 kb on - strand, within PP_4737at 5388.246 kb on + strand, within PP_4737at 5388.247 kb on - strand, within PP_4737at 5388.365 kb on + strand, within PP_4737at 5388.603 kb on + strand, within PP_4737at 5388.642 kb on + strand, within PP_4737at 5388.642 kb on + strand, within PP_4737at 5388.642 kb on + strand, within PP_4737at 5388.852 kb on + strand, within PP_4737at 5388.853 kb on - strand, within PP_4737at 5388.919 kb on - strand, within PP_4737at 5388.919 kb on - strand, within PP_4737at 5389.088 kb on + strandat 5389.088 kb on + strandat 5389.089 kb on - strandat 5389.124 kb on + strandat 5389.124 kb on + strandat 5389.125 kb on - strandat 5389.180 kb on - strandat 5389.194 kb on - strandat 5389.248 kb on + strandat 5389.249 kb on - strandat 5389.249 kb on - strandat 5389.263 kb on + strandat 5389.263 kb on + strandat 5389.264 kb on - strandat 5389.310 kb on + strandat 5389.311 kb on - strandat 5389.311 kb on - strandat 5389.311 kb on - strandat 5389.312 kb on + strandat 5389.312 kb on + strandat 5389.313 kb on - strandat 5389.313 kb on - strandat 5389.313 kb on - strandat 5389.313 kb on - strandat 5389.330 kb on + strandat 5389.331 kb on - strandat 5389.342 kb on + strandat 5389.416 kb on - strandat 5389.462 kb on + strandat 5389.462 kb on + strandat 5389.462 kb on + strandat 5389.463 kb on - strandat 5389.485 kb on + strandat 5389.521 kb on + strandat 5389.521 kb on + strandat 5389.521 kb on + strandat 5389.522 kb on - strandat 5389.583 kb on + strandat 5389.583 kb on + strandat 5389.584 kb on - strandat 5389.584 kb on - strandat 5389.842 kb on + strand, within PP_4738at 5389.842 kb on + strand, within PP_4738at 5389.843 kb on - strand, within PP_4738at 5389.843 kb on - strand, within PP_4738at 5389.843 kb on - strand, within PP_4738at 5389.963 kb on + strandat 5389.965 kb on + strandat 5389.984 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adaptation in M9 media timecourse 3; day 2
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5,385,519 + PP_4736 0.22 -0.4
5,385,519 + PP_4736 0.22 +1.1
5,385,520 - PP_4736 0.22 -0.4
5,385,520 - PP_4736 0.22 -0.2
5,385,654 + PP_4736 0.34 -2.5
5,385,654 + PP_4736 0.34 +0.4
5,385,654 + PP_4736 0.34 +0.8
5,385,654 + PP_4736 0.34 -0.5
5,385,654 + PP_4736 0.34 +0.4
5,385,654 + PP_4736 0.34 -0.3
5,385,654 + PP_4736 0.34 +0.8
5,385,654 + PP_4736 0.34 -0.3
5,385,654 + PP_4736 0.34 +0.2
5,385,655 - PP_4736 0.34 -0.0
5,385,655 - PP_4736 0.34 +0.7
5,385,655 - PP_4736 0.34 -0.9
5,385,655 - PP_4736 0.34 +0.8
5,385,655 - PP_4736 0.34 +0.1
5,385,655 - PP_4736 0.34 -0.7
5,385,655 - PP_4736 0.34 +0.4
5,385,655 - PP_4736 0.34 -0.3
5,385,655 - PP_4736 0.34 +0.2
5,385,655 - PP_4736 0.34 -0.3
5,385,655 - PP_4736 0.34 -0.2
5,385,658 + PP_4736 0.34 +0.2
5,385,658 + PP_4736 0.34 -0.3
5,385,658 + PP_4736 0.34 +0.2
5,385,659 - PP_4736 0.34 +0.3
5,385,659 - PP_4736 0.34 +1.4
5,385,898 - PP_4736 0.55 +0.1
5,385,898 - PP_4736 0.55 +0.4
5,385,927 + PP_4736 0.57 +0.1
5,385,927 + PP_4736 0.57 -0.7
5,385,927 + PP_4736 0.57 -1.8
5,385,928 - PP_4736 0.57 -0.1
5,385,928 - PP_4736 0.57 -0.1
5,386,246 + PP_4736 0.85 -0.2
5,386,246 + PP_4736 0.85 +0.3
5,386,246 + PP_4736 0.85 -0.6
5,386,247 - PP_4736 0.85 +0.3
5,386,269 + PP_4736 0.87 -0.7
5,386,269 + PP_4736 0.87 -0.4
5,386,270 - PP_4736 0.87 -1.1
5,386,270 - +0.2
5,386,455 + -0.7
5,386,455 + -1.0
5,386,455 + -1.7
5,386,455 + +0.8
5,386,455 + +0.1
5,386,965 + PP_4737 0.17 -0.2
5,386,965 + PP_4737 0.17 -1.0
5,386,965 + PP_4737 0.17 -0.4
5,386,965 + PP_4737 0.17 +0.2
5,386,965 + PP_4737 0.17 -0.4
5,386,965 + PP_4737 0.17 +0.5
5,386,966 - PP_4737 0.17 -0.8
5,386,966 - PP_4737 0.17 -0.2
5,387,143 - PP_4737 0.23 -0.5
5,387,191 - PP_4737 0.25 -1.1
5,387,269 - PP_4737 0.28 -0.4
5,387,269 - PP_4737 0.28 -0.3
5,387,381 - PP_4737 0.32 +0.2
5,387,443 + PP_4737 0.34 +0.1
5,387,444 - PP_4737 0.34 -0.5
5,387,596 - PP_4737 0.39 +0.5
5,387,596 - PP_4737 0.39 -0.3
5,387,751 + PP_4737 0.45 +0.4
5,387,751 + PP_4737 0.45 -0.1
5,387,807 + PP_4737 0.47 -0.3
5,387,971 - PP_4737 0.53 -0.5
5,387,971 - PP_4737 0.53 +0.0
5,388,056 - PP_4737 0.56 +0.8
5,388,246 + PP_4737 0.62 -2.0
5,388,247 - PP_4737 0.62 +0.2
5,388,365 + PP_4737 0.67 -0.3
5,388,603 + PP_4737 0.75 -0.3
5,388,642 + PP_4737 0.77 -0.6
5,388,642 + PP_4737 0.77 -0.4
5,388,642 + PP_4737 0.77 +0.3
5,388,852 + PP_4737 0.84 -0.0
5,388,853 - PP_4737 0.84 -0.8
5,388,919 - PP_4737 0.86 -0.2
5,388,919 - PP_4737 0.86 -0.1
5,389,088 + -0.0
5,389,088 + -0.4
5,389,089 - -1.6
5,389,124 + -0.1
5,389,124 + -0.6
5,389,125 - -0.7
5,389,180 - +0.6
5,389,194 - +0.4
5,389,248 + -0.7
5,389,249 - -1.0
5,389,249 - -0.1
5,389,263 + -0.5
5,389,263 + +1.1
5,389,264 - +0.2
5,389,310 + +0.4
5,389,311 - +0.2
5,389,311 - -0.9
5,389,311 - -0.8
5,389,312 + +0.4
5,389,312 + +0.9
5,389,313 - -0.0
5,389,313 - -1.0
5,389,313 - +2.8
5,389,313 - -0.8
5,389,330 + -0.2
5,389,331 - +0.1
5,389,342 + +0.4
5,389,416 - -1.7
5,389,462 + -0.2
5,389,462 + -1.2
5,389,462 + -0.1
5,389,463 - +0.4
5,389,485 + +0.2
5,389,521 + +0.3
5,389,521 + +0.3
5,389,521 + -0.2
5,389,522 - +1.4
5,389,583 + +0.2
5,389,583 + -1.7
5,389,584 - -0.1
5,389,584 - +1.4
5,389,842 + PP_4738 0.76 -0.7
5,389,842 + PP_4738 0.76 +0.1
5,389,843 - PP_4738 0.76 +0.6
5,389,843 - PP_4738 0.76 +0.5
5,389,843 - PP_4738 0.76 +0.6
5,389,963 + +1.4
5,389,965 + +1.4
5,389,984 + +1.4

Or see this region's nucleotide sequence