Strain Fitness in Pseudomonas putida KT2440 around PP_4688

Experiment: Adaptation in M9 media timecourse 3; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 2
5,326,381	+				-0.4
5,326,390	+				+1.4
5,326,439	+				-0.3
5,326,439	+				-1.8
5,326,439	+				+0.0
5,326,440	-				-0.6
5,326,440	-				-0.9
5,326,440	-				-0.6
5,326,460	+				+0.3
5,326,460	+				-0.1
5,326,461	-				-0.2
5,326,461	-				-0.2
5,326,585	+				-0.3
5,326,585	+				+2.7
5,326,585	+				-0.2
5,326,585	+				+0.7
5,326,598	+				-0.8
5,326,598	+				+0.7
5,326,599	-				-0.7
5,326,599	-				-0.0
5,326,599	-				-0.9
5,326,599	-				-0.2
5,326,680	+		PP_4687	0.19	-1.2
5,326,759	+		PP_4687	0.29	-0.9
5,326,760	-		PP_4687	0.29	+0.3
5,326,760	-		PP_4687	0.29	-0.2
5,326,849	+		PP_4687	0.41	-0.3
5,326,849	+		PP_4687	0.41	-0.5
5,326,850	-		PP_4687	0.41	-0.2
5,326,850	-		PP_4687	0.41	-0.7
5,326,911	-		PP_4687	0.49	-1.0
5,327,279	+				-0.3
5,327,279	+				+0.2
5,327,280	-				-0.3
5,327,280	-				+0.3
5,327,280	-				+1.0
5,327,280	-				-0.4
5,327,280	-				+0.0
5,327,280	-				+0.0
5,327,363	+				+0.6
5,327,363	+				-0.5
5,327,505	+		PP_4688	0.20	+2.4
5,327,703	+		PP_4688	0.39	-1.2
5,327,703	+		PP_4688	0.39	-1.6
5,327,722	+				-0.2
5,327,847	+		PP_4688	0.53	-0.3
5,327,847	+		PP_4688	0.53	-1.5
5,327,848	-		PP_4688	0.53	-0.6
5,327,848	-		PP_4688	0.53	-0.5
5,327,848	-		PP_4688	0.53	-0.5
5,327,848	-		PP_4688	0.53	-1.7
5,327,893	+		PP_4688	0.57	+2.4
5,327,908	-		PP_4688	0.58	-0.5
5,327,945	+		PP_4688	0.62	+0.4
5,327,947	+		PP_4688	0.62	-0.1
5,328,302	+				-0.6
5,328,303	-				+0.2
5,328,314	+				-0.6
5,328,314	+				+0.3
5,328,315	-				-1.0
5,328,315	-				-0.2
5,328,315	-				-0.3
5,328,600	+		PP_4689	0.30	-0.9
5,328,601	-		PP_4689	0.30	+0.4
5,328,601	-		PP_4689	0.30	+0.5
5,328,601	-		PP_4689	0.30	-0.4
5,328,601	-		PP_4689	0.30	-1.6
5,329,054	+		PP_4689	0.81	-0.5
5,329,054	+		PP_4689	0.81	+0.4
5,329,054	+		PP_4689	0.81	-0.5
5,329,054	+		PP_4689	0.81	+0.4
5,329,054	+		PP_4689	0.81	+0.4
5,329,055	-		PP_4689	0.81	-0.3
5,329,279	-				-0.3
5,329,279	-				-1.6
5,329,279	-				-0.0