Experiment: Adaptation in M9 media timecourse 3; day 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4035 and PP_4036 are separated by 343 nucleotides PP_4036 and PP_4037 are separated by 135 nucleotides
PP_4035: PP_4035 - putative PydP transporter, NCS1 nucleoside transporter family, at 4,545,855 to 4,547,345
_4035
PP_4036: PP_4036 - D-hydantoinase/dihydropyrimidinase, at 4,547,689 to 4,549,128
_4036
PP_4037: PP_4037 - NADP-dependent dihydropyrimidine dehydrogenase subunit, at 4,549,264 to 4,550,631
_4037
Position (kb)
4547
4548
4549
4550 Strain fitness (log2 ratio)
-2
-1
0
1 at 4546.977 kb on + strand, within PP_4035 at 4546.977 kb on + strand, within PP_4035 at 4546.977 kb on + strand, within PP_4035 at 4546.978 kb on - strand, within PP_4035 at 4546.978 kb on - strand, within PP_4035 at 4546.978 kb on - strand, within PP_4035 at 4546.978 kb on - strand, within PP_4035 at 4547.035 kb on + strand, within PP_4035 at 4547.036 kb on - strand, within PP_4035 at 4547.070 kb on + strand, within PP_4035 at 4547.082 kb on + strand, within PP_4035 at 4547.083 kb on - strand, within PP_4035 at 4547.134 kb on + strand, within PP_4035 at 4547.161 kb on + strand, within PP_4035 at 4547.161 kb on + strand, within PP_4035 at 4547.162 kb on - strand, within PP_4035 at 4547.162 kb on - strand, within PP_4035 at 4547.162 kb on - strand at 4547.247 kb on + strand at 4547.248 kb on - strand at 4547.248 kb on - strand at 4547.248 kb on - strand at 4547.248 kb on - strand at 4547.248 kb on - strand at 4547.248 kb on - strand at 4547.248 kb on - strand at 4547.260 kb on + strand at 4547.260 kb on + strand at 4547.345 kb on + strand at 4547.346 kb on - strand at 4547.346 kb on - strand at 4547.346 kb on - strand at 4547.426 kb on + strand at 4547.460 kb on + strand at 4547.468 kb on + strand at 4547.582 kb on + strand at 4547.582 kb on + strand at 4547.836 kb on + strand, within PP_4036 at 4547.836 kb on + strand, within PP_4036 at 4547.836 kb on + strand, within PP_4036 at 4547.837 kb on - strand, within PP_4036 at 4548.066 kb on + strand, within PP_4036 at 4548.067 kb on - strand, within PP_4036 at 4548.151 kb on + strand, within PP_4036 at 4548.152 kb on - strand, within PP_4036 at 4548.395 kb on - strand, within PP_4036 at 4548.466 kb on + strand, within PP_4036 at 4548.466 kb on + strand, within PP_4036 at 4548.467 kb on - strand, within PP_4036 at 4548.731 kb on + strand, within PP_4036 at 4548.731 kb on + strand, within PP_4036 at 4548.732 kb on - strand, within PP_4036 at 4548.796 kb on - strand, within PP_4036 at 4549.043 kb on - strand at 4549.043 kb on - strand at 4549.072 kb on + strand at 4549.073 kb on - strand at 4549.073 kb on - strand at 4549.073 kb on - strand at 4549.223 kb on + strand at 4549.223 kb on + strand at 4549.224 kb on - strand at 4549.224 kb on - strand at 4549.224 kb on - strand at 4549.257 kb on + strand at 4549.257 kb on + strand at 4549.257 kb on + strand at 4549.258 kb on - strand at 4549.258 kb on - strand at 4549.258 kb on - strand at 4549.390 kb on + strand at 4549.390 kb on + strand at 4549.396 kb on + strand at 4549.396 kb on + strand at 4549.433 kb on + strand, within PP_4037 at 4549.433 kb on + strand, within PP_4037 at 4549.433 kb on + strand, within PP_4037 at 4549.451 kb on + strand, within PP_4037 at 4549.451 kb on + strand, within PP_4037 at 4549.624 kb on + strand, within PP_4037 at 4549.690 kb on - strand, within PP_4037 at 4549.804 kb on + strand, within PP_4037 at 4549.805 kb on - strand, within PP_4037 at 4549.837 kb on + strand, within PP_4037 at 4549.837 kb on + strand, within PP_4037 at 4549.837 kb on + strand, within PP_4037 at 4549.837 kb on + strand, within PP_4037 at 4549.838 kb on - strand, within PP_4037 at 4549.942 kb on + strand, within PP_4037 at 4549.942 kb on + strand, within PP_4037 at 4549.943 kb on - strand, within PP_4037 at 4549.988 kb on + strand, within PP_4037 at 4549.988 kb on + strand, within PP_4037 at 4549.989 kb on - strand, within PP_4037 at 4549.989 kb on - strand, within PP_4037 at 4550.035 kb on + strand, within PP_4037 at 4550.035 kb on + strand, within PP_4037 at 4550.036 kb on - strand, within PP_4037 at 4550.036 kb on - strand, within PP_4037 at 4550.036 kb on - strand, within PP_4037 at 4550.036 kb on - strand, within PP_4037
Per-strain Table
Position Strand Gene LocusTag Fraction Adaptation in M9 media timecourse 3; day 2 remove 4,546,977 + PP_4035 0.75 +0.1 4,546,977 + PP_4035 0.75 -0.6 4,546,977 + PP_4035 0.75 +0.9 4,546,978 - PP_4035 0.75 -0.7 4,546,978 - PP_4035 0.75 +0.6 4,546,978 - PP_4035 0.75 +0.1 4,546,978 - PP_4035 0.75 -0.7 4,547,035 + PP_4035 0.79 +0.2 4,547,036 - PP_4035 0.79 +1.3 4,547,070 + PP_4035 0.81 +0.8 4,547,082 + PP_4035 0.82 +0.1 4,547,083 - PP_4035 0.82 +0.3 4,547,134 + PP_4035 0.86 -1.6 4,547,161 + PP_4035 0.88 -0.7 4,547,161 + PP_4035 0.88 -1.4 4,547,162 - PP_4035 0.88 -0.6 4,547,162 - PP_4035 0.88 +0.0 4,547,162 - -0.6 4,547,247 + -2.6 4,547,248 - +0.3 4,547,248 - -0.3 4,547,248 - +0.1 4,547,248 - -0.1 4,547,248 - -0.3 4,547,248 - -0.1 4,547,248 - -0.8 4,547,260 + -0.1 4,547,260 + -1.7 4,547,345 + +0.3 4,547,346 - +0.4 4,547,346 - -0.7 4,547,346 - +0.0 4,547,426 + +0.4 4,547,460 + -0.9 4,547,468 + -0.3 4,547,582 + -0.3 4,547,582 + +0.3 4,547,836 + PP_4036 0.10 +0.1 4,547,836 + PP_4036 0.10 +0.9 4,547,836 + PP_4036 0.10 -0.1 4,547,837 - PP_4036 0.10 +0.8 4,548,066 + PP_4036 0.26 -0.3 4,548,067 - PP_4036 0.26 -0.9 4,548,151 + PP_4036 0.32 +0.3 4,548,152 - PP_4036 0.32 +0.3 4,548,395 - PP_4036 0.49 +0.9 4,548,466 + PP_4036 0.54 +0.2 4,548,466 + PP_4036 0.54 -0.1 4,548,467 - PP_4036 0.54 -0.5 4,548,731 + PP_4036 0.72 +0.3 4,548,731 + PP_4036 0.72 -1.1 4,548,732 - PP_4036 0.72 +0.6 4,548,796 - PP_4036 0.77 -0.3 4,549,043 - +0.1 4,549,043 - -0.7 4,549,072 + -0.2 4,549,073 - +0.4 4,549,073 - -0.0 4,549,073 - +0.0 4,549,223 + -0.3 4,549,223 + -0.3 4,549,224 - -1.1 4,549,224 - -0.3 4,549,224 - -1.7 4,549,257 + -1.0 4,549,257 + -0.1 4,549,257 + -0.3 4,549,258 - -0.4 4,549,258 - +0.0 4,549,258 - -0.9 4,549,390 + -0.3 4,549,390 + -1.9 4,549,396 + +1.5 4,549,396 + -0.0 4,549,433 + PP_4037 0.12 -0.7 4,549,433 + PP_4037 0.12 -0.7 4,549,433 + PP_4037 0.12 +0.1 4,549,451 + PP_4037 0.14 +0.5 4,549,451 + PP_4037 0.14 -0.0 4,549,624 + PP_4037 0.26 +0.3 4,549,690 - PP_4037 0.31 -0.0 4,549,804 + PP_4037 0.39 +0.6 4,549,805 - PP_4037 0.40 +0.0 4,549,837 + PP_4037 0.42 +0.8 4,549,837 + PP_4037 0.42 -0.5 4,549,837 + PP_4037 0.42 -0.2 4,549,837 + PP_4037 0.42 -0.4 4,549,838 - PP_4037 0.42 -0.6 4,549,942 + PP_4037 0.50 +0.1 4,549,942 + PP_4037 0.50 -0.2 4,549,943 - PP_4037 0.50 -0.5 4,549,988 + PP_4037 0.53 +0.2 4,549,988 + PP_4037 0.53 -0.5 4,549,989 - PP_4037 0.53 -0.0 4,549,989 - PP_4037 0.53 -0.7 4,550,035 + PP_4037 0.56 +0.1 4,550,035 + PP_4037 0.56 +0.3 4,550,036 - PP_4037 0.56 +0.2 4,550,036 - PP_4037 0.56 -1.1 4,550,036 - PP_4037 0.56 +0.5 4,550,036 - PP_4037 0.56 +0.1
Or see this region's nucleotide sequence