Strain Fitness in Pseudomonas putida KT2440 around PP_3767

Experiment: Adaptation in M9 media timecourse 3; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 2
4,295,968	+		PP_3765	0.68	-0.4
4,295,969	-		PP_3765	0.69	+0.6
4,295,969	-		PP_3765	0.69	-0.7
4,296,046	+				+0.8
4,296,047	-				+0.1
4,296,047	-				+0.7
4,296,047	-				-0.7
4,296,062	+				-0.6
4,296,095	+				+0.5
4,296,095	+				-0.8
4,296,095	+				+0.5
4,296,096	-				+0.2
4,296,096	-				-0.2
4,296,096	-				-1.1
4,296,131	-				-0.9
4,296,151	-				-0.5
4,296,244	+				+0.5
4,296,244	+				+0.5
4,296,245	-				-0.4
4,296,245	-				-0.4
4,296,429	+		PP_3766	0.23	+0.9
4,296,495	+		PP_3766	0.36	-0.8
4,296,495	+		PP_3766	0.36	-1.2
4,296,627	+		PP_3766	0.61	-0.7
4,296,831	+				+0.2
4,296,887	+				-1.4
4,296,887	+				-0.1
4,296,887	+				-0.0
4,296,887	+				-1.5
4,296,887	+				+0.3
4,296,888	-				+0.3
4,296,888	-				+0.9
4,296,888	-				-0.2
4,296,888	-				-0.6
4,296,889	+				+0.3
4,296,889	+				-0.3
4,296,889	+				+0.2
4,296,889	+				-0.3
4,296,889	+				-0.2
4,296,889	+				-1.1
4,296,890	-				-0.8
4,296,890	-				-2.0
4,296,890	-				+0.2
4,296,890	-				-0.3
4,296,890	-				+0.8
4,296,890	-				+0.6
4,296,890	-				+0.2
4,296,898	-				+0.2
4,296,910	+				+0.0
4,296,910	+				-1.5
4,296,910	+				+0.9
4,296,910	+				-0.6
4,296,910	+				+0.7
4,296,910	+				-0.6
4,296,910	+				-1.0
4,296,911	-				+0.3
4,296,924	-				+0.0
4,297,010	-		PP_3767	0.33	-0.1
4,297,059	+		PP_3767	0.53	-0.7
4,297,059	+		PP_3767	0.53	-0.9
4,297,059	+		PP_3767	0.53	-0.7
4,297,060	-		PP_3767	0.53	-1.8
4,297,060	-		PP_3767	0.53	-0.7
4,297,060	-		PP_3767	0.53	-0.0
4,297,060	-		PP_3767	0.53	-0.6
4,297,226	+				+1.3
4,297,226	+				-0.0
4,297,226	+				+1.3
4,297,226	+				-0.2
4,297,226	+				-0.0
4,297,226	+				-0.0
4,297,227	-				-0.6
4,297,227	-				-0.1
4,297,227	-				+0.2
4,297,227	-				+0.3
4,297,227	-				+0.1
4,297,229	+				-0.5
4,297,229	+				-0.0
4,297,229	+				-0.7
4,297,229	+				-1.7
4,297,229	+				-0.5
4,297,229	+				+1.5
4,297,229	+				-0.6
4,297,229	+				+0.4
4,297,229	+				-0.6
4,297,229	+				+2.5
4,297,230	-				-0.8
4,297,230	-				-0.2
4,297,230	-				-1.2
4,297,233	+				-0.2
4,297,233	+				+0.3
4,297,233	+				+0.5
4,297,233	+				-0.1
4,297,237	+				-0.5
4,297,237	+				-0.2
4,297,296	+				+0.1
4,297,746	+		PP_3768	0.63	+0.1
4,297,746	+		PP_3768	0.63	-0.6
4,297,746	+		PP_3768	0.63	-1.1
4,297,746	+		PP_3768	0.63	-1.2
4,297,747	-		PP_3768	0.63	+1.2
4,297,848	+		PP_3768	0.75	-1.1
4,297,848	+		PP_3768	0.75	-0.2
4,297,849	-		PP_3768	0.75	-0.0
4,297,935	+		PP_3768	0.86	-0.9
4,297,938	+		PP_3768	0.86	+0.4
4,297,939	-		PP_3768	0.86	+0.8
4,297,939	-		PP_3768	0.86	-0.7
4,297,962	+		PP_3768	0.89	-1.7
4,298,053	+				-2.7
4,298,054	-				+0.7
4,298,054	-				+0.1
4,298,084	+				+0.1
4,298,120	+				+0.6
4,298,120	+				+0.7
4,298,131	+				+0.1
4,298,132	-				+0.4
4,298,170	+				-1.0
4,298,170	+				+1.0
4,298,171	-				+0.9
4,298,171	-				-0.0
4,298,171	-				-0.6
4,298,173	+				+0.8
4,298,173	+				-0.1
4,298,173	+				+0.3