Strain Fitness in Pseudomonas putida KT2440 around PP_3417

Experiment: Adaptation in M9 media timecourse 3; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 2
3,866,853	+				-0.7
3,866,854	-				-0.2
3,866,854	-				+0.3
3,866,854	-				-0.3
3,866,892	+				-0.4
3,866,921	+				+0.2
3,866,922	-				+0.4
3,866,953	+				+0.1
3,866,953	+				-1.6
3,866,953	+				-0.1
3,866,953	+				-0.5
3,866,954	-				+0.0
3,866,997	+				-0.4
3,866,998	-				-1.4
3,867,020	-				-0.0
3,867,020	-				-0.4
3,867,079	+				+0.3
3,867,079	+				-0.3
3,867,080	-				-0.4
3,867,584	-				-0.8
3,867,714	+				+0.4
3,867,715	-				-1.4
3,867,715	-				+1.0
3,867,750	-				+3.8
3,867,750	-				+1.4
3,867,783	-				-0.1
3,867,783	-				-0.4
3,867,928	+		PP_3417	0.14	-1.1
3,867,928	+		PP_3417	0.14	-0.6
3,868,287	+		PP_3417	0.41	-0.3
3,868,440	-		PP_3417	0.52	+0.2
3,868,440	-		PP_3417	0.52	+0.9
3,868,440	-		PP_3417	0.52	-1.3
3,868,453	+		PP_3417	0.53	-0.5
3,868,453	+		PP_3417	0.53	-0.6
3,868,453	+		PP_3417	0.53	-0.7
3,868,454	-		PP_3417	0.53	+0.5
3,868,856	+		PP_3417	0.83	-0.7
3,868,909	+		PP_3417	0.87	+0.1
3,868,981	-				-1.0
3,868,981	-				-0.3
3,868,981	-				-1.1
3,869,101	+				+0.7
3,869,140	+				-0.6
3,869,140	+				-0.2
3,869,140	+				-0.2
3,869,141	-				-1.4
3,869,141	-				-1.4
3,869,141	-				-0.7
3,869,141	-				-0.6
3,869,156	-				+0.1
3,869,156	-				-0.4
3,869,347	-		PP_3418	0.57	+0.3
3,869,467	+				-0.3
3,869,490	-				-0.4
3,869,490	-				+0.7
3,869,492	+				-0.2
3,869,832	+		PP_3419	0.24	+0.0
3,869,832	+		PP_3419	0.24	+0.3
3,869,832	+		PP_3419	0.24	+0.0
3,869,832	+		PP_3419	0.24	-0.3
3,869,833	-		PP_3419	0.24	+0.1
3,869,833	-		PP_3419	0.24	+0.4