Strain Fitness in Pseudomonas putida KT2440 around PP_2669

Experiment: Adaptation in M9 media timecourse 3; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 2
3,055,431	+		PP_2667	0.76	+0.7
3,055,431	+		PP_2667	0.76	+0.5
3,055,432	-		PP_2667	0.76	-0.0
3,055,432	-		PP_2667	0.76	-0.6
3,055,432	-		PP_2667	0.76	-0.2
3,055,449	+		PP_2667	0.78	-0.2
3,055,449	+		PP_2667	0.78	-0.3
3,055,449	+		PP_2667	0.78	+0.2
3,055,449	+		PP_2667	0.78	+1.0
3,055,450	-		PP_2667	0.78	-0.5
3,055,450	-		PP_2667	0.78	+0.5
3,055,450	-		PP_2667	0.78	+0.3
3,055,450	-		PP_2667	0.78	-0.1
3,055,450	-		PP_2667	0.78	-0.4
3,055,450	-		PP_2667	0.78	-0.4
3,055,450	-		PP_2667	0.78	+0.7
3,055,450	-		PP_2667	0.78	-0.3
3,055,556	-				-0.1
3,055,556	-				+0.4
3,055,615	-				+0.4
3,055,892	-		PP_2668	0.37	+0.6
3,056,204	+		PP_2668	0.79	+0.9
3,056,204	+		PP_2668	0.79	+0.4
3,056,205	-		PP_2668	0.79	-0.5
3,056,603	-		PP_2669	0.25	+0.5
3,056,603	-		PP_2669	0.25	-0.3
3,056,603	-		PP_2669	0.25	-0.1
3,056,712	+		PP_2669	0.36	-0.1
3,056,713	-		PP_2669	0.36	-0.8
3,056,994	+		PP_2669	0.64	-0.3
3,056,995	-		PP_2669	0.64	+2.8
3,056,998	+		PP_2669	0.65	+0.1
3,056,998	+		PP_2669	0.65	-0.1
3,056,999	-		PP_2669	0.65	+0.0
3,056,999	-		PP_2669	0.65	-0.3
3,057,125	-		PP_2669	0.77	-0.4
3,057,359	+				+0.2
3,057,359	+				-0.0
3,057,360	-				-0.1
3,057,360	-				+0.7
3,057,386	-				-1.0
3,057,389	+				+1.6
3,057,389	+				-0.6
3,057,389	+				+0.4
3,057,389	+				-0.9
3,057,390	-				+0.3
3,057,412	+				-0.5
3,057,856	-		PP_5538	0.40	+0.4
3,057,856	-		PP_5538	0.40	-0.1
3,057,856	-		PP_5538	0.40	+0.2
3,057,998	-		PP_5538	0.52	+0.2
3,058,106	+		PP_5538	0.61	-0.6
3,058,106	+		PP_5538	0.61	+0.1
3,058,107	-				+1.2
3,058,346	+		PP_5538	0.81	+0.2
3,058,346	+		PP_5538	0.81	-0.2
3,058,347	-		PP_5538	0.81	+0.0
3,058,347	-		PP_5538	0.81	-0.5
3,058,347	-		PP_5538	0.81	-0.0
3,058,347	-		PP_5538	0.81	-1.7