Strain Fitness in Pseudomonas putida KT2440 around PP_1993

Experiment: Adaptation in M9 media timecourse 3; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 2
2,258,995	+		PP_1992	0.65	+0.7
2,258,996	-		PP_1992	0.66	-0.6
2,259,062	+		PP_1992	0.72	-1.9
2,259,178	+		PP_1992	0.84	+0.2
2,259,178	+		PP_1992	0.84	+0.5
2,259,179	-		PP_1992	0.84	-0.4
2,259,179	-		PP_1992	0.84	+0.3
2,259,207	+		PP_1992	0.87	+0.4
2,259,208	-				-1.4
2,259,208	-		PP_1992	0.87	-0.4
2,259,208	-		PP_1992	0.87	-0.1
2,259,208	-		PP_1992	0.87	-0.1
2,259,208	-		PP_1992	0.87	-0.6
2,259,208	-		PP_1992	0.87	+0.4
2,259,208	-		PP_1992	0.87	-0.7
2,259,220	+		PP_1992	0.88	+0.2
2,259,220	+		PP_1992	0.88	+1.0
2,259,220	+		PP_1992	0.88	-3.1
2,259,221	-		PP_1992	0.88	-0.0
2,259,326	+				+0.4
2,259,339	+				+0.3
2,259,397	+				+0.0
2,259,397	+				-0.1
2,259,398	-				-0.0
2,259,398	-				+0.3
2,259,398	-				+0.0
2,259,398	-				-0.5
2,259,641	+				+1.4
2,259,785	+		PP_1993	0.14	-0.1
2,259,785	+		PP_1993	0.14	+0.3
2,259,786	-		PP_1993	0.14	-0.1
2,259,786	-		PP_1993	0.14	-0.2
2,259,786	-		PP_1993	0.14	+0.3
2,259,787	+		PP_1993	0.14	-0.2
2,259,788	-		PP_1993	0.14	-0.0
2,259,788	-		PP_1993	0.14	+0.2
2,259,872	+		PP_1993	0.17	-0.1
2,259,872	+		PP_1993	0.17	-0.2
2,259,917	-		PP_1993	0.18	-0.2
2,260,490	-		PP_1993	0.39	-0.3
2,260,771	-		PP_1993	0.50	-0.2
2,260,771	-		PP_1993	0.50	+0.0
2,260,771	-		PP_1993	0.50	+0.5
2,260,934	-		PP_1993	0.56	-0.0
2,261,015	+		PP_1993	0.59	-0.9
2,261,187	-		PP_1993	0.65	+0.5
2,261,187	-		PP_1993	0.65	-0.2
2,261,521	-		PP_1993	0.77	+0.8
2,262,035	+				+0.4
2,262,035	+				+0.2
2,262,035	+				+0.0
2,262,035	+				-0.5
2,262,036	-				-0.2
2,262,036	-				-0.1
2,262,038	-				+0.3
2,262,250	+				-0.1
2,262,251	-				-0.2
2,262,252	+				+0.2
2,262,252	+				+0.3
2,262,253	-				+2.4
2,262,269	+				+0.3
2,262,365	-				-0.6
2,262,674	-		PP_1994	0.45	+0.4
2,262,682	+		PP_1994	0.46	+0.2
2,262,682	+		PP_1994	0.46	+1.4
2,262,683	-		PP_1994	0.46	+1.4
2,262,683	-				+1.4
2,262,851	-				-0.1
2,262,851	-		PP_1994	0.66	-0.1
2,262,851	-		PP_1994	0.66	+1.4
2,262,851	-		PP_1994	0.66	+0.4
2,262,865	-		PP_1994	0.67	+1.4
2,262,931	-		PP_1994	0.75	+0.4
2,263,052	-				+1.4
2,263,099	+				+1.4