Strain Fitness in Pseudomonas putida KT2440 around PP_1695

Experiment: Adaptation in M9 media timecourse 3; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 3; day 2
1,885,926	-		PP_1694	0.40	+0.7
1,886,053	+		PP_1694	0.48	+0.4
1,886,054	-		PP_1694	0.48	-1.0
1,886,069	-		PP_1694	0.49	-0.7
1,886,117	+		PP_1694	0.53	-1.3
1,886,234	+		PP_1694	0.60	+0.3
1,886,328	-		PP_1694	0.67	+0.6
1,886,328	-		PP_1694	0.67	-0.3
1,886,467	+		PP_1694	0.76	+0.2
1,886,468	-		PP_1694	0.76	+0.0
1,886,639	+		PP_1694	0.88	-0.7
1,886,639	+		PP_1694	0.88	-0.4
1,886,640	-		PP_1694	0.88	-0.0
1,886,704	+				+0.3
1,886,704	+				-0.8
1,886,704	+				-0.5
1,886,787	+				-0.4
1,886,863	+				+1.4
1,886,864	-				+1.4
1,886,884	-				+1.4
1,886,926	-				+1.4
1,887,004	+				-0.0
1,887,005	-				+0.8
1,887,005	-				+0.2
1,887,150	+		PP_1695	0.10	-2.1
1,887,150	+		PP_1695	0.10	+0.9
1,887,337	-		PP_1695	0.16	+0.1
1,887,537	+		PP_1695	0.21	-0.2
1,887,762	+		PP_1695	0.28	-0.3
1,887,763	-		PP_1695	0.28	-1.3
1,887,763	-		PP_1695	0.28	+0.1
1,888,262	-		PP_1695	0.42	-0.4
1,888,262	-		PP_1695	0.42	+0.1
1,888,912	+		PP_1695	0.61	-0.7
1,888,978	+		PP_1695	0.63	+0.2
1,889,083	+		PP_1695	0.66	+1.1
1,889,083	+		PP_1695	0.66	-0.4
1,889,083	+		PP_1695	0.66	+0.4
1,889,084	-		PP_1695	0.66	+0.1
1,889,084	-		PP_1695	0.66	+0.5
1,889,084	-		PP_1695	0.66	+0.0
1,889,413	+		PP_1695	0.75	+0.3
1,889,414	-		PP_1695	0.75	+0.5
1,889,414	-		PP_1695	0.75	-0.0
1,889,414	-		PP_1695	0.75	-0.7
1,889,474	+		PP_1695	0.77	-0.2
1,889,769	+		PP_1695	0.86	-1.1
1,889,770	-		PP_1695	0.86	-0.7
1,889,779	-		PP_1695	0.86	-0.0
1,889,853	+		PP_1695	0.88	+0.5
1,889,853	+		PP_1695	0.88	+0.5
1,889,853	+		PP_1695	0.88	-0.0
1,889,854	-		PP_1695	0.88	-0.8
1,889,854	-		PP_1695	0.88	-0.7
1,889,882	-		PP_1695	0.89	-0.5
1,889,882	-		PP_1695	0.89	-0.1
1,889,882	-		PP_1695	0.89	-0.5
1,890,056	-				-0.7
1,890,056	-				-0.5
1,890,128	-				+0.2
1,890,128	-				+0.1
1,890,148	+				-0.9
1,890,148	+				-0.3
1,890,199	+				-0.2
1,890,199	+				-0.8
1,890,200	-				+0.3
1,890,227	+				-0.0
1,890,227	+				+0.4
1,890,227	+				+0.7
1,890,228	-				-0.0
1,890,228	-				-0.2
1,890,229	+				-0.6
1,890,229	+				-0.2
1,890,229	+				-0.3
1,890,229	+				-0.4
1,890,229	+				+0.4
1,890,230	-				+0.9
1,890,230	-				-0.4
1,890,230	-				-0.2
1,890,230	-				-0.3
1,890,230	-				+0.0
1,890,230	-				+0.1
1,890,230	-				+0.2
1,890,295	-				-1.1
1,890,358	+				-0.6
1,890,359	-				+0.1
1,890,359	-				+0.4
1,890,359	-				-0.1
1,890,425	-				+0.2
1,890,463	+				-0.0
1,890,464	-				+0.4
1,890,464	-				-1.1
1,890,464	-				+0.4
1,890,489	+				+0.3
1,890,557	-		PP_1696	0.13	+0.7
1,890,560	-		PP_1696	0.14	-0.5
1,890,560	-		PP_1696	0.14	+0.6
1,890,560	-		PP_1696	0.14	-0.2
1,890,560	-		PP_1696	0.14	+0.2
1,890,596	+		PP_1696	0.17	+0.4
1,890,604	+		PP_1696	0.17	+0.6
1,890,604	+		PP_1696	0.17	-0.6
1,890,604	+		PP_1696	0.17	-1.4
1,890,604	+		PP_1696	0.17	+0.2
1,890,605	-		PP_1696	0.17	+0.1
1,890,605	-		PP_1696	0.17	+2.0
1,890,605	-		PP_1696	0.17	+0.0
1,890,865	+		PP_1696	0.40	-0.3
1,890,878	-		PP_1696	0.41	+0.0
1,890,878	-		PP_1696	0.41	-1.0
1,890,878	-		PP_1696	0.41	-1.3
1,890,927	-		PP_1696	0.45	+0.1
1,891,156	+		PP_1696	0.64	+0.4
1,891,156	+		PP_1696	0.64	+0.1
1,891,156	+		PP_1696	0.64	+0.1
1,891,157	-		PP_1696	0.64	-0.9
1,891,157	-		PP_1696	0.64	-1.6
1,891,197	+		PP_1696	0.68	-0.2