Strain Fitness in Pseudomonas putida KT2440 around PP_1168

Experiment: Adaptation in M9 media timecourse 3; day 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1167 and PP_1168 are separated by 0 nucleotidesPP_1168 and PP_1169 are separated by 9 nucleotides PP_1167: PP_1167 - D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data), at 1,342,271 to 1,343,551 _1167 PP_1168: PP_1168 - D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data), at 1,343,552 to 1,344,136 _1168 PP_1169: PP_1169 - D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data), at 1,344,146 to 1,345,117 _1169 Position (kb) 1343 1344 1345Strain fitness (log2 ratio) -1 0 1at 1342.611 kb on + strand, within PP_1167at 1342.680 kb on + strand, within PP_1167at 1342.733 kb on + strand, within PP_1167at 1342.734 kb on - strand, within PP_1167at 1342.734 kb on - strand, within PP_1167at 1342.734 kb on - strand, within PP_1167at 1342.734 kb on - strand, within PP_1167at 1342.957 kb on - strand, within PP_1167at 1343.079 kb on + strand, within PP_1167at 1343.401 kb on + strand, within PP_1167at 1343.402 kb on - strand, within PP_1167at 1343.488 kb on - strandat 1343.488 kb on - strandat 1343.553 kb on + strandat 1343.554 kb on - strandat 1343.754 kb on + strand, within PP_1168at 1343.754 kb on + strand, within PP_1168at 1343.757 kb on + strand, within PP_1168at 1343.757 kb on + strand, within PP_1168at 1343.757 kb on + strand, within PP_1168at 1343.757 kb on + strand, within PP_1168at 1343.758 kb on - strand, within PP_1168at 1343.758 kb on - strand, within PP_1168at 1343.758 kb on - strand, within PP_1168at 1343.758 kb on - strand, within PP_1168at 1343.758 kb on - strand, within PP_1168at 1343.758 kb on - strand, within PP_1168at 1343.843 kb on - strand, within PP_1168at 1343.843 kb on - strand, within PP_1168at 1343.906 kb on + strand, within PP_1168at 1343.906 kb on + strand, within PP_1168at 1343.907 kb on - strand, within PP_1168at 1343.965 kb on - strandat 1344.079 kb on + strandat 1344.079 kb on + strandat 1344.080 kb on - strandat 1344.148 kb on - strandat 1344.163 kb on + strandat 1344.183 kb on + strandat 1344.405 kb on - strand, within PP_1169at 1344.405 kb on - strand, within PP_1169at 1344.441 kb on + strand, within PP_1169at 1344.441 kb on + strand, within PP_1169at 1344.441 kb on + strand, within PP_1169at 1344.442 kb on - strand, within PP_1169at 1344.442 kb on - strand, within PP_1169at 1344.442 kb on - strand, within PP_1169at 1344.442 kb on - strand, within PP_1169at 1344.444 kb on + strand, within PP_1169at 1344.445 kb on - strand, within PP_1169at 1344.445 kb on - strand, within PP_1169at 1344.609 kb on - strand, within PP_1169at 1344.609 kb on - strand, within PP_1169at 1344.663 kb on + strand, within PP_1169at 1344.663 kb on + strand, within PP_1169at 1344.664 kb on - strand, within PP_1169at 1344.664 kb on - strand, within PP_1169at 1344.812 kb on + strand, within PP_1169at 1344.813 kb on - strand, within PP_1169at 1345.085 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adaptation in M9 media timecourse 3; day 2
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1,342,611 + PP_1167 0.27 +0.4
1,342,680 + PP_1167 0.32 +0.5
1,342,733 + PP_1167 0.36 +0.1
1,342,734 - PP_1167 0.36 -1.0
1,342,734 - PP_1167 0.36 +0.5
1,342,734 - PP_1167 0.36 +0.3
1,342,734 - PP_1167 0.36 -0.4
1,342,957 - PP_1167 0.54 +0.2
1,343,079 + PP_1167 0.63 -0.4
1,343,401 + PP_1167 0.88 +0.4
1,343,402 - PP_1167 0.88 +1.4
1,343,488 - -0.4
1,343,488 - -1.3
1,343,553 + -0.4
1,343,554 - -0.3
1,343,754 + PP_1168 0.35 +0.1
1,343,754 + PP_1168 0.35 -0.9
1,343,757 + PP_1168 0.35 -0.8
1,343,757 + PP_1168 0.35 -0.2
1,343,757 + PP_1168 0.35 +0.4
1,343,757 + PP_1168 0.35 +0.0
1,343,758 - PP_1168 0.35 +0.0
1,343,758 - PP_1168 0.35 -0.4
1,343,758 - PP_1168 0.35 -0.3
1,343,758 - PP_1168 0.35 +0.1
1,343,758 - PP_1168 0.35 +0.4
1,343,758 - PP_1168 0.35 +0.5
1,343,843 - PP_1168 0.50 +0.0
1,343,843 - PP_1168 0.50 -0.1
1,343,906 + PP_1168 0.61 -0.2
1,343,906 + PP_1168 0.61 +0.2
1,343,907 - PP_1168 0.61 +0.0
1,343,965 - +0.7
1,344,079 + -0.6
1,344,079 + +0.4
1,344,080 - +0.9
1,344,148 - -0.2
1,344,163 + -0.7
1,344,183 + +0.4
1,344,405 - PP_1169 0.27 +0.6
1,344,405 - PP_1169 0.27 +0.1
1,344,441 + PP_1169 0.30 +0.0
1,344,441 + PP_1169 0.30 -1.2
1,344,441 + PP_1169 0.30 -0.4
1,344,442 - PP_1169 0.30 -0.5
1,344,442 - PP_1169 0.30 +0.2
1,344,442 - PP_1169 0.30 -0.2
1,344,442 - PP_1169 0.30 +0.1
1,344,444 + PP_1169 0.31 +0.0
1,344,445 - PP_1169 0.31 +0.0
1,344,445 - PP_1169 0.31 +0.5
1,344,609 - PP_1169 0.48 +0.6
1,344,609 - PP_1169 0.48 +0.5
1,344,663 + PP_1169 0.53 -0.2
1,344,663 + PP_1169 0.53 -0.6
1,344,664 - PP_1169 0.53 -0.2
1,344,664 - PP_1169 0.53 +0.4
1,344,812 + PP_1169 0.69 +0.2
1,344,813 - PP_1169 0.69 +0.3
1,345,085 + +1.0

Or see this region's nucleotide sequence