Strain Fitness in Pseudomonas putida KT2440 around PP_0667

Experiment: Adaptation in M9 media timecourse 3; day 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0665 and PP_0666 are separated by 16 nucleotidesPP_0666 and PP_0667 are separated by 170 nucleotidesPP_0667 and PP_0668 overlap by 4 nucleotides PP_0665: PP_0665 - putative glyceraldehyde-3-phosphate dehydrogenase, at 773,394 to 774,812 _0665 PP_0666: PP_0666 - conserved protein of unknown function, at 774,829 to 775,191 _0666 PP_0667: PP_0667 - RNA polymerase sigma-70 factor, ECF subfamily, at 775,362 to 775,898 _0667 PP_0668: PP_0668 - putative Transmembrane sensor, at 775,895 to 776,860 _0668 Position (kb) 775 776Strain fitness (log2 ratio) -2 -1 0 1at 774.456 kb on + strand, within PP_0665at 774.589 kb on - strand, within PP_0665at 774.589 kb on - strand, within PP_0665at 774.650 kb on + strand, within PP_0665at 774.667 kb on + strand, within PP_0665at 774.667 kb on + strand, within PP_0665at 774.667 kb on + strand, within PP_0665at 774.667 kb on + strand, within PP_0665at 774.668 kb on - strand, within PP_0665at 774.668 kb on - strand, within PP_0665at 774.726 kb on + strandat 774.726 kb on + strandat 774.726 kb on + strandat 774.727 kb on - strandat 774.727 kb on - strandat 774.727 kb on - strandat 774.763 kb on - strandat 774.822 kb on + strandat 774.823 kb on - strandat 774.823 kb on - strandat 774.823 kb on - strandat 775.066 kb on + strand, within PP_0666at 775.066 kb on + strand, within PP_0666at 775.066 kb on + strand, within PP_0666at 775.067 kb on - strand, within PP_0666at 775.067 kb on - strand, within PP_0666at 775.136 kb on - strand, within PP_0666at 775.225 kb on + strandat 775.413 kb on + strandat 775.414 kb on - strandat 775.498 kb on + strand, within PP_0667at 775.557 kb on + strand, within PP_0667at 775.558 kb on - strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.569 kb on - strand, within PP_0667at 775.727 kb on + strand, within PP_0667at 775.727 kb on + strand, within PP_0667at 775.728 kb on - strand, within PP_0667at 775.833 kb on + strand, within PP_0667at 775.834 kb on - strand, within PP_0667at 775.847 kb on + strandat 775.847 kb on + strandat 775.847 kb on + strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.851 kb on + strandat 775.851 kb on + strandat 775.851 kb on + strandat 775.851 kb on + strandat 775.852 kb on - strandat 775.852 kb on - strandat 775.852 kb on - strandat 776.043 kb on - strand, within PP_0668at 776.047 kb on - strand, within PP_0668at 776.047 kb on - strand, within PP_0668at 776.047 kb on - strand, within PP_0668at 776.246 kb on + strandat 776.366 kb on + strand, within PP_0668at 776.499 kb on + strand, within PP_0668at 776.500 kb on - strand, within PP_0668at 776.752 kb on + strand, within PP_0668at 776.753 kb on - strand, within PP_0668at 776.824 kb on + strandat 776.825 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adaptation in M9 media timecourse 3; day 2
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774,456 + PP_0665 0.75 +0.4
774,589 - PP_0665 0.84 -0.4
774,589 - PP_0665 0.84 +0.4
774,650 + PP_0665 0.89 +0.7
774,667 + PP_0665 0.90 -0.1
774,667 + PP_0665 0.90 +1.4
774,667 + PP_0665 0.90 +0.4
774,667 + PP_0665 0.90 +0.0
774,668 - PP_0665 0.90 +0.1
774,668 - PP_0665 0.90 -1.4
774,726 + +0.2
774,726 + -0.1
774,726 + -0.4
774,727 - +0.0
774,727 - -0.4
774,727 - +0.8
774,763 - -0.2
774,822 + +0.3
774,823 - +0.3
774,823 - +0.1
774,823 - -0.2
775,066 + PP_0666 0.65 -0.3
775,066 + PP_0666 0.65 +0.2
775,066 + PP_0666 0.65 -0.1
775,067 - PP_0666 0.66 -0.1
775,067 - PP_0666 0.66 -1.1
775,136 - PP_0666 0.85 -0.7
775,225 + -0.4
775,413 + -0.6
775,414 - +0.4
775,498 + PP_0667 0.25 +1.0
775,557 + PP_0667 0.36 -0.1
775,558 - PP_0667 0.36 +0.4
775,568 + PP_0667 0.38 +0.2
775,568 + PP_0667 0.38 +0.1
775,568 + PP_0667 0.38 -0.6
775,568 + PP_0667 0.38 -2.1
775,568 + PP_0667 0.38 +1.1
775,568 + PP_0667 0.38 +0.5
775,569 - PP_0667 0.39 +0.7
775,727 + PP_0667 0.68 +0.9
775,727 + PP_0667 0.68 +0.9
775,728 - PP_0667 0.68 +1.1
775,833 + PP_0667 0.88 -0.7
775,834 - PP_0667 0.88 +0.2
775,847 + +0.8
775,847 + -0.0
775,847 + +0.5
775,848 - +1.4
775,848 - +0.5
775,848 - -0.2
775,848 - +0.3
775,848 - -1.1
775,848 - +1.4
775,848 - -0.1
775,851 + -0.1
775,851 + +0.8
775,851 + -0.4
775,851 + +0.4
775,852 - +0.2
775,852 - -0.1
775,852 - -0.3
776,043 - PP_0668 0.15 -2.2
776,047 - PP_0668 0.16 -0.6
776,047 - PP_0668 0.16 -0.2
776,047 - PP_0668 0.16 -0.3
776,246 + +0.4
776,366 + PP_0668 0.49 -0.1
776,499 + PP_0668 0.63 -1.5
776,500 - PP_0668 0.63 +0.3
776,752 + PP_0668 0.89 +0.7
776,753 - PP_0668 0.89 -1.6
776,824 + -0.9
776,825 - +0.3

Or see this region's nucleotide sequence