Strain Fitness in Pseudomonas putida KT2440 around PP_0357

Experiment: Adaptation in M9 media timecourse 3; day 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0356 and PP_0357 are separated by 449 nucleotidesPP_0357 and PP_0358 are separated by 232 nucleotides PP_0356: PP_0356 - malate synthase G, at 433,022 to 435,199 _0356 PP_0357: PP_0357 - ACT domain protein, at 435,649 to 436,167 _0357 PP_0358: PP_0358 - conserved membrane protein of unknown function, at 436,400 to 437,287 _0358 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2at 434.721 kb on + strand, within PP_0356at 434.721 kb on + strand, within PP_0356at 434.722 kb on - strand, within PP_0356at 434.772 kb on + strand, within PP_0356at 434.784 kb on + strand, within PP_0356at 435.150 kb on + strandat 435.151 kb on - strandat 435.151 kb on - strandat 435.190 kb on - strandat 435.190 kb on - strandat 435.223 kb on - strandat 435.237 kb on + strandat 435.237 kb on + strandat 435.237 kb on + strandat 435.237 kb on + strandat 435.237 kb on + strandat 435.237 kb on + strandat 435.238 kb on - strandat 435.238 kb on - strandat 435.238 kb on - strandat 435.238 kb on - strandat 435.238 kb on - strandat 435.240 kb on + strandat 435.240 kb on + strandat 435.240 kb on + strandat 435.241 kb on - strandat 435.241 kb on - strandat 435.248 kb on + strandat 435.259 kb on + strandat 435.343 kb on + strandat 435.344 kb on - strandat 435.405 kb on + strandat 435.405 kb on + strandat 435.405 kb on + strandat 435.405 kb on + strandat 435.405 kb on + strandat 435.406 kb on - strandat 435.406 kb on - strandat 435.437 kb on + strandat 435.438 kb on - strandat 435.449 kb on + strandat 435.470 kb on - strandat 435.470 kb on - strandat 435.486 kb on + strandat 435.490 kb on + strandat 435.490 kb on + strandat 435.588 kb on + strandat 435.589 kb on - strandat 435.589 kb on - strandat 435.589 kb on - strandat 435.590 kb on + strandat 435.590 kb on + strandat 435.662 kb on + strandat 435.663 kb on - strandat 435.663 kb on - strandat 435.671 kb on + strandat 435.671 kb on + strandat 435.672 kb on - strandat 435.672 kb on - strandat 435.672 kb on - strandat 435.672 kb on - strandat 435.705 kb on + strand, within PP_0357at 435.706 kb on - strand, within PP_0357at 435.706 kb on - strand, within PP_0357at 435.706 kb on - strand, within PP_0357at 435.735 kb on + strand, within PP_0357at 435.815 kb on - strand, within PP_0357at 435.853 kb on + strand, within PP_0357at 435.853 kb on + strand, within PP_0357at 435.854 kb on - strand, within PP_0357at 435.989 kb on + strand, within PP_0357at 435.989 kb on + strand, within PP_0357at 436.234 kb on + strandat 436.235 kb on - strandat 436.340 kb on - strandat 436.367 kb on + strandat 436.368 kb on - strandat 436.515 kb on - strand, within PP_0358at 436.573 kb on - strand, within PP_0358at 436.604 kb on + strand, within PP_0358at 436.663 kb on + strand, within PP_0358at 436.664 kb on - strand, within PP_0358at 436.664 kb on - strand, within PP_0358at 436.665 kb on + strand, within PP_0358at 436.666 kb on - strand, within PP_0358at 436.666 kb on - strand, within PP_0358at 436.703 kb on + strand, within PP_0358at 436.784 kb on - strand, within PP_0358at 436.797 kb on + strand, within PP_0358at 436.797 kb on + strand, within PP_0358at 436.798 kb on - strand, within PP_0358at 436.830 kb on - strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.947 kb on - strand, within PP_0358at 436.947 kb on - strand, within PP_0358at 436.947 kb on - strand, within PP_0358at 436.968 kb on + strand, within PP_0358at 436.968 kb on + strand, within PP_0358at 436.968 kb on + strand, within PP_0358at 436.969 kb on - strand, within PP_0358at 436.969 kb on - strand, within PP_0358at 436.969 kb on - strand, within PP_0358at 436.971 kb on + strand, within PP_0358at 436.971 kb on + strand, within PP_0358at 436.972 kb on - strand, within PP_0358at 436.972 kb on - strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.020 kb on - strand, within PP_0358at 437.020 kb on - strand, within PP_0358at 437.126 kb on + strand, within PP_0358at 437.127 kb on - strand, within PP_0358

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Per-strain Table

Position Strand Gene LocusTag Fraction Adaptation in M9 media timecourse 3; day 2
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434,721 + PP_0356 0.78 -0.2
434,721 + PP_0356 0.78 +0.9
434,722 - PP_0356 0.78 +0.1
434,772 + PP_0356 0.80 +1.1
434,784 + PP_0356 0.81 -0.2
435,150 + -2.3
435,151 - +0.4
435,151 - +1.3
435,190 - +0.4
435,190 - -0.8
435,223 - +0.1
435,237 + -0.4
435,237 + -0.4
435,237 + +0.2
435,237 + -0.2
435,237 + +0.1
435,237 + +0.3
435,238 - -0.2
435,238 - -0.1
435,238 - -0.1
435,238 - -1.3
435,238 - -0.6
435,240 + -0.1
435,240 + +0.7
435,240 + +0.2
435,241 - -0.6
435,241 - +0.1
435,248 + +0.3
435,259 + -1.3
435,343 + -1.7
435,344 - -1.5
435,405 + +1.1
435,405 + -0.8
435,405 + -0.1
435,405 + +0.3
435,405 + +0.6
435,406 - -0.4
435,406 - +2.0
435,437 + +0.1
435,438 - -0.3
435,449 + +0.1
435,470 - -0.6
435,470 - -1.4
435,486 + +1.1
435,490 + -0.3
435,490 + -0.6
435,588 + -1.1
435,589 - +0.2
435,589 - +0.2
435,589 - -0.3
435,590 + +0.1
435,590 + -0.5
435,662 + -1.2
435,663 - -1.2
435,663 - -0.9
435,671 + -0.6
435,671 + +0.2
435,672 - -0.1
435,672 - +0.7
435,672 - -0.5
435,672 - +0.4
435,705 + PP_0357 0.11 -0.2
435,706 - PP_0357 0.11 -1.3
435,706 - PP_0357 0.11 -1.1
435,706 - PP_0357 0.11 -0.6
435,735 + PP_0357 0.17 -1.0
435,815 - PP_0357 0.32 +0.1
435,853 + PP_0357 0.39 -0.6
435,853 + PP_0357 0.39 +1.4
435,854 - PP_0357 0.39 +0.1
435,989 + PP_0357 0.66 -0.2
435,989 + PP_0357 0.66 -1.2
436,234 + +0.0
436,235 - -0.6
436,340 - +0.3
436,367 + +0.4
436,368 - +0.4
436,515 - PP_0358 0.13 +0.1
436,573 - PP_0358 0.19 -0.5
436,604 + PP_0358 0.23 -0.1
436,663 + PP_0358 0.30 -0.6
436,664 - PP_0358 0.30 -0.2
436,664 - PP_0358 0.30 -0.1
436,665 + PP_0358 0.30 +0.1
436,666 - PP_0358 0.30 +1.4
436,666 - PP_0358 0.30 +0.8
436,703 + PP_0358 0.34 +0.2
436,784 - PP_0358 0.43 -0.1
436,797 + PP_0358 0.45 +0.1
436,797 + PP_0358 0.45 +0.5
436,798 - PP_0358 0.45 -0.9
436,830 - PP_0358 0.48 +0.1
436,946 + PP_0358 0.61 -0.2
436,946 + PP_0358 0.61 +0.7
436,946 + PP_0358 0.61 +0.2
436,946 + PP_0358 0.61 +0.8
436,947 - PP_0358 0.62 -0.5
436,947 - PP_0358 0.62 -0.3
436,947 - PP_0358 0.62 -0.6
436,968 + PP_0358 0.64 +0.1
436,968 + PP_0358 0.64 +1.1
436,968 + PP_0358 0.64 +0.1
436,969 - PP_0358 0.64 +1.1
436,969 - PP_0358 0.64 -0.3
436,969 - PP_0358 0.64 -0.3
436,971 + PP_0358 0.64 -0.2
436,971 + PP_0358 0.64 +0.1
436,972 - PP_0358 0.64 +0.2
436,972 - PP_0358 0.64 +0.4
437,019 + PP_0358 0.70 +0.3
437,019 + PP_0358 0.70 -0.6
437,019 + PP_0358 0.70 -0.1
437,019 + PP_0358 0.70 +1.4
437,019 + PP_0358 0.70 +0.5
437,019 + PP_0358 0.70 -0.8
437,019 + PP_0358 0.70 +0.4
437,020 - PP_0358 0.70 -0.9
437,020 - PP_0358 0.70 -0.1
437,126 + PP_0358 0.82 +2.1
437,127 - PP_0358 0.82 -1.6

Or see this region's nucleotide sequence