Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5172 and Atu5173 are separated by 51 nucleotides Atu5173 and Atu8203 are separated by 509 nucleotides Atu8203 and Atu5175 are separated by 207 nucleotides Atu5175 and Atu5176 are separated by 1 nucleotides
Atu5172: Atu5172 - type IV secretion protein AvhB11, at 169,100 to 170,110
Atu5172
Atu5173: Atu5173 - dehydrogenase, at 170,162 to 170,551
Atu5173
Atu8203: Atu8203 - hypothetical protein, at 171,061 to 171,345
Atu8203
Atu5175: Atu5175 - two component response regulator, at 171,553 to 172,227
Atu5175
Atu5176: Atu5176 - two component sensor kinase, at 172,229 to 173,578
Atu5176
Position (kb) 171
172 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 170.076 kb on - strand at 170.082 kb on - strand at 170.141 kb on - strand at 170.191 kb on + strand at 170.243 kb on + strand, within Atu5173 at 170.265 kb on - strand, within Atu5173 at 170.301 kb on + strand, within Atu5173 at 170.365 kb on - strand, within Atu5173 at 170.563 kb on + strand at 170.599 kb on + strand at 170.599 kb on + strand at 170.715 kb on + strand at 170.857 kb on + strand at 170.871 kb on + strand at 170.878 kb on - strand at 170.879 kb on - strand at 170.879 kb on - strand at 170.967 kb on + strand at 171.053 kb on + strand at 171.107 kb on + strand, within Atu8203 at 171.176 kb on + strand, within Atu8203 at 171.240 kb on - strand, within Atu8203 at 171.240 kb on - strand, within Atu8203 at 171.291 kb on + strand, within Atu8203 at 171.321 kb on + strand at 171.371 kb on - strand at 171.376 kb on - strand at 171.385 kb on + strand at 171.417 kb on - strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.608 kb on + strand at 171.609 kb on - strand at 171.623 kb on + strand, within Atu5175 at 171.628 kb on + strand, within Atu5175 at 171.726 kb on + strand, within Atu5175 at 171.734 kb on - strand, within Atu5175 at 171.745 kb on + strand, within Atu5175 at 171.753 kb on - strand, within Atu5175 at 171.833 kb on - strand, within Atu5175 at 171.838 kb on + strand, within Atu5175 at 171.841 kb on - strand, within Atu5175 at 171.895 kb on + strand, within Atu5175 at 171.903 kb on - strand, within Atu5175 at 171.914 kb on + strand, within Atu5175 at 171.914 kb on + strand, within Atu5175 at 171.979 kb on - strand, within Atu5175 at 172.015 kb on + strand, within Atu5175 at 172.017 kb on + strand, within Atu5175 at 172.057 kb on + strand, within Atu5175 at 172.067 kb on + strand, within Atu5175 at 172.084 kb on + strand, within Atu5175 at 172.091 kb on - strand, within Atu5175 at 172.231 kb on + strand at 172.277 kb on + strand at 172.282 kb on + strand at 172.285 kb on - strand at 172.306 kb on - strand at 172.308 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 170,076 - -0.2 170,082 - +0.1 170,141 - +1.1 170,191 + -1.2 170,243 + Atu5173 0.21 +2.8 170,265 - Atu5173 0.26 -0.4 170,301 + Atu5173 0.36 +0.3 170,365 - Atu5173 0.52 +0.3 170,563 + -0.4 170,599 + -1.0 170,599 + -0.0 170,715 + +0.1 170,857 + +1.1 170,871 + -0.3 170,878 - +0.4 170,879 - +0.0 170,879 - -1.6 170,967 + -0.4 171,053 + +0.0 171,107 + Atu8203 0.16 -0.6 171,176 + Atu8203 0.40 +0.1 171,240 - Atu8203 0.63 -0.6 171,240 - Atu8203 0.63 +1.0 171,291 + Atu8203 0.81 -0.8 171,321 + +2.5 171,371 - -0.3 171,376 - +0.2 171,385 + +0.8 171,417 - +0.0 171,602 + +0.1 171,602 + +0.3 171,608 + -0.2 171,609 - -0.0 171,623 + Atu5175 0.10 +0.5 171,628 + Atu5175 0.11 -0.6 171,726 + Atu5175 0.26 -0.2 171,734 - Atu5175 0.27 +0.6 171,745 + Atu5175 0.28 -0.3 171,753 - Atu5175 0.30 +0.1 171,833 - Atu5175 0.41 -1.2 171,838 + Atu5175 0.42 -0.2 171,841 - Atu5175 0.43 -0.8 171,895 + Atu5175 0.51 -0.6 171,903 - Atu5175 0.52 -0.3 171,914 + Atu5175 0.53 +1.1 171,914 + Atu5175 0.53 +0.1 171,979 - Atu5175 0.63 -2.0 172,015 + Atu5175 0.68 +0.3 172,017 + Atu5175 0.69 +0.5 172,057 + Atu5175 0.75 -0.4 172,067 + Atu5175 0.76 -1.2 172,084 + Atu5175 0.79 -1.9 172,091 - Atu5175 0.80 -1.9 172,231 + +0.1 172,277 + -1.2 172,282 + -0.4 172,285 - +0.9 172,306 - +0.2 172,308 + +2.5
Or see this region's nucleotide sequence