Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5406 and Atu5407 are separated by 145 nucleotides Atu5407 and Atu5408 are separated by 103 nucleotides Atu5408 and Atu5409 are separated by 3 nucleotides
Atu5406: Atu5406 - GntR family transcriptional regulator, at 400,747 to 401,496
Atu5406
Atu5407: Atu5407 - hypothetical protein, at 401,642 to 402,772
Atu5407
Atu5408: Atu5408 - ABC transporter membrane spanning protein (amino acid), at 402,876 to 403,730
Atu5408
Atu5409: Atu5409 - ABC transporter substrate binding protein (amino acid), at 403,734 to 404,669
Atu5409
Position (kb) 401
402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 400.802 kb on - strand at 400.806 kb on + strand at 400.817 kb on - strand at 400.824 kb on - strand, within Atu5406 at 400.849 kb on - strand, within Atu5406 at 400.876 kb on - strand, within Atu5406 at 400.913 kb on - strand, within Atu5406 at 400.937 kb on + strand, within Atu5406 at 400.944 kb on + strand, within Atu5406 at 400.973 kb on + strand, within Atu5406 at 401.088 kb on - strand, within Atu5406 at 401.152 kb on + strand, within Atu5406 at 401.188 kb on + strand, within Atu5406 at 401.195 kb on + strand, within Atu5406 at 401.203 kb on - strand, within Atu5406 at 401.203 kb on - strand, within Atu5406 at 401.225 kb on - strand, within Atu5406 at 401.318 kb on - strand, within Atu5406 at 401.355 kb on + strand, within Atu5406 at 401.383 kb on + strand, within Atu5406 at 401.383 kb on + strand, within Atu5406 at 401.383 kb on + strand, within Atu5406 at 401.383 kb on + strand, within Atu5406 at 401.386 kb on - strand, within Atu5406 at 401.391 kb on - strand, within Atu5406 at 401.391 kb on - strand, within Atu5406 at 401.391 kb on - strand, within Atu5406 at 401.391 kb on - strand, within Atu5406 at 401.391 kb on - strand, within Atu5406 at 401.410 kb on - strand, within Atu5406 at 401.465 kb on + strand at 401.465 kb on + strand at 401.465 kb on + strand at 401.473 kb on - strand at 401.625 kb on - strand at 401.632 kb on - strand at 401.762 kb on - strand, within Atu5407 at 401.762 kb on - strand, within Atu5407 at 401.887 kb on + strand, within Atu5407 at 401.974 kb on - strand, within Atu5407 at 402.077 kb on - strand, within Atu5407 at 402.077 kb on - strand, within Atu5407 at 402.082 kb on + strand, within Atu5407 at 402.090 kb on - strand, within Atu5407 at 402.116 kb on - strand, within Atu5407 at 402.126 kb on - strand, within Atu5407 at 402.128 kb on + strand, within Atu5407 at 402.136 kb on - strand, within Atu5407 at 402.185 kb on + strand, within Atu5407 at 402.200 kb on - strand, within Atu5407 at 402.219 kb on + strand, within Atu5407 at 402.222 kb on - strand, within Atu5407 at 402.222 kb on - strand, within Atu5407 at 402.282 kb on - strand, within Atu5407 at 402.293 kb on - strand, within Atu5407 at 402.295 kb on + strand, within Atu5407 at 402.303 kb on + strand, within Atu5407 at 402.335 kb on - strand, within Atu5407 at 402.351 kb on + strand, within Atu5407 at 402.366 kb on + strand, within Atu5407 at 402.384 kb on - strand, within Atu5407 at 402.443 kb on + strand, within Atu5407 at 402.638 kb on - strand, within Atu5407 at 402.642 kb on + strand, within Atu5407 at 402.653 kb on + strand, within Atu5407 at 402.803 kb on - strand at 402.856 kb on + strand at 402.864 kb on - strand at 402.925 kb on + strand at 402.930 kb on + strand at 402.990 kb on - strand, within Atu5408 at 402.990 kb on - strand, within Atu5408 at 403.026 kb on - strand, within Atu5408 at 403.132 kb on + strand, within Atu5408 at 403.159 kb on + strand, within Atu5408 at 403.167 kb on - strand, within Atu5408 at 403.167 kb on - strand, within Atu5408 at 403.167 kb on - strand, within Atu5408 at 403.176 kb on - strand, within Atu5408 at 403.176 kb on - strand, within Atu5408 at 403.177 kb on - strand, within Atu5408 at 403.200 kb on - strand, within Atu5408 at 403.200 kb on - strand, within Atu5408 at 403.202 kb on + strand, within Atu5408 at 403.260 kb on + strand, within Atu5408 at 403.413 kb on + strand, within Atu5408 at 403.446 kb on + strand, within Atu5408 at 403.446 kb on + strand, within Atu5408 at 403.454 kb on - strand, within Atu5408 at 403.558 kb on + strand, within Atu5408 at 403.622 kb on - strand, within Atu5408 at 403.668 kb on + strand at 403.668 kb on + strand at 403.675 kb on + strand at 403.675 kb on - strand at 403.676 kb on - strand at 403.731 kb on + strand at 403.740 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 400,802 - -0.5 400,806 + +0.5 400,817 - -0.4 400,824 - Atu5406 0.10 +0.8 400,849 - Atu5406 0.14 -0.4 400,876 - Atu5406 0.17 -1.2 400,913 - Atu5406 0.22 +0.2 400,937 + Atu5406 0.25 -0.2 400,944 + Atu5406 0.26 +0.1 400,973 + Atu5406 0.30 +0.1 401,088 - Atu5406 0.45 -0.3 401,152 + Atu5406 0.54 +1.4 401,188 + Atu5406 0.59 -0.5 401,195 + Atu5406 0.60 +0.4 401,203 - Atu5406 0.61 -0.5 401,203 - Atu5406 0.61 -1.5 401,225 - Atu5406 0.64 +0.1 401,318 - Atu5406 0.76 -0.9 401,355 + Atu5406 0.81 +1.1 401,383 + Atu5406 0.85 -0.9 401,383 + Atu5406 0.85 +1.1 401,383 + Atu5406 0.85 -0.0 401,383 + Atu5406 0.85 +0.0 401,386 - Atu5406 0.85 +0.2 401,391 - Atu5406 0.86 -0.7 401,391 - Atu5406 0.86 -0.2 401,391 - Atu5406 0.86 -1.2 401,391 - Atu5406 0.86 +1.1 401,391 - Atu5406 0.86 -0.3 401,410 - Atu5406 0.88 -0.9 401,465 + -1.0 401,465 + -0.7 401,465 + -0.3 401,473 - +0.8 401,625 - +0.4 401,632 - +0.3 401,762 - Atu5407 0.11 +0.2 401,762 - Atu5407 0.11 +0.5 401,887 + Atu5407 0.22 -0.6 401,974 - Atu5407 0.29 +0.1 402,077 - Atu5407 0.38 +2.1 402,077 - Atu5407 0.38 +0.0 402,082 + Atu5407 0.39 +0.9 402,090 - Atu5407 0.40 +1.3 402,116 - Atu5407 0.42 -0.1 402,126 - Atu5407 0.43 +0.1 402,128 + Atu5407 0.43 +1.5 402,136 - Atu5407 0.44 +0.1 402,185 + Atu5407 0.48 -0.5 402,200 - Atu5407 0.49 +1.1 402,219 + Atu5407 0.51 -3.0 402,222 - Atu5407 0.51 -0.2 402,222 - Atu5407 0.51 -0.1 402,282 - Atu5407 0.57 -1.2 402,293 - Atu5407 0.58 +1.4 402,295 + Atu5407 0.58 +0.3 402,303 + Atu5407 0.58 -1.1 402,335 - Atu5407 0.61 -0.3 402,351 + Atu5407 0.63 -0.0 402,366 + Atu5407 0.64 -1.2 402,384 - Atu5407 0.66 -0.3 402,443 + Atu5407 0.71 +1.0 402,638 - Atu5407 0.88 +1.4 402,642 + Atu5407 0.88 +1.1 402,653 + Atu5407 0.89 -0.4 402,803 - -0.6 402,856 + -0.3 402,864 - +0.6 402,925 + +0.8 402,930 + +0.5 402,990 - Atu5408 0.13 -0.7 402,990 - Atu5408 0.13 -0.2 403,026 - Atu5408 0.18 +2.1 403,132 + Atu5408 0.30 +0.1 403,159 + Atu5408 0.33 -0.1 403,167 - Atu5408 0.34 -0.5 403,167 - Atu5408 0.34 -0.5 403,167 - Atu5408 0.34 +0.1 403,176 - Atu5408 0.35 +1.1 403,176 - Atu5408 0.35 +0.1 403,177 - Atu5408 0.35 -2.2 403,200 - Atu5408 0.38 -0.7 403,200 - Atu5408 0.38 +0.9 403,202 + Atu5408 0.38 -0.6 403,260 + Atu5408 0.45 +0.1 403,413 + Atu5408 0.63 +2.3 403,446 + Atu5408 0.67 +0.3 403,446 + Atu5408 0.67 -0.5 403,454 - Atu5408 0.68 -1.2 403,558 + Atu5408 0.80 -0.5 403,622 - Atu5408 0.87 +0.4 403,668 + +0.1 403,668 + +0.9 403,675 + -1.2 403,675 - +0.2 403,676 - +0.1 403,731 + +0.3 403,740 - -0.6
Or see this region's nucleotide sequence