Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0856 and Atu0857 are separated by 252 nucleotides Atu0857 and Atu0858 overlap by 47 nucleotides Atu0858 and Atu0859 overlap by 4 nucleotides Atu0859 and Atu0860 are separated by 57 nucleotides
Atu0856: Atu0856 - transcriptional regulator, LysR family, at 855,732 to 856,496
Atu0856
Atu0857: Atu0857 - oxidoreductase, at 856,749 to 857,471
Atu0857
Atu0858: Atu0858 - putative carboxymuconolactone decarboxylase, at 857,425 to 857,958
Atu0858
Atu0859: Atu0859 - hypothetical protein, at 857,955 to 858,305
Atu0859
Atu0860: Atu0860 - hypothetical protein, at 858,363 to 859,925
Atu0860
Position (kb) 857
858 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 856.426 kb on + strand at 856.454 kb on + strand at 856.510 kb on - strand at 856.510 kb on - strand at 856.526 kb on - strand at 856.544 kb on + strand at 856.552 kb on - strand at 856.805 kb on - strand at 856.815 kb on - strand at 856.890 kb on - strand, within Atu0857 at 856.981 kb on + strand, within Atu0857 at 856.988 kb on - strand, within Atu0857 at 857.063 kb on + strand, within Atu0857 at 857.071 kb on + strand, within Atu0857 at 857.084 kb on + strand, within Atu0857 at 857.140 kb on + strand, within Atu0857 at 857.148 kb on - strand, within Atu0857 at 857.183 kb on - strand, within Atu0857 at 857.278 kb on + strand, within Atu0857 at 857.349 kb on + strand, within Atu0857 at 857.351 kb on - strand, within Atu0857 at 857.378 kb on - strand, within Atu0857 at 857.536 kb on - strand, within Atu0858 at 857.554 kb on - strand, within Atu0858 at 857.564 kb on - strand, within Atu0858 at 857.649 kb on - strand, within Atu0858 at 857.676 kb on + strand, within Atu0858 at 857.677 kb on + strand, within Atu0858 at 857.684 kb on - strand, within Atu0858 at 857.684 kb on - strand, within Atu0858 at 857.691 kb on - strand, within Atu0858 at 857.702 kb on - strand, within Atu0858 at 857.718 kb on - strand, within Atu0858 at 857.757 kb on + strand, within Atu0858 at 857.792 kb on - strand, within Atu0858 at 857.878 kb on - strand, within Atu0858 at 857.878 kb on - strand, within Atu0858 at 858.058 kb on - strand, within Atu0859 at 858.108 kb on + strand, within Atu0859 at 858.108 kb on + strand, within Atu0859 at 858.177 kb on + strand, within Atu0859 at 858.187 kb on + strand, within Atu0859 at 858.340 kb on - strand at 858.368 kb on + strand at 858.376 kb on - strand at 858.422 kb on - strand at 858.422 kb on - strand at 858.526 kb on - strand, within Atu0860 at 858.537 kb on - strand, within Atu0860 at 858.755 kb on - strand, within Atu0860 at 858.806 kb on + strand, within Atu0860 at 858.808 kb on + strand, within Atu0860 at 858.819 kb on + strand, within Atu0860 at 858.920 kb on + strand, within Atu0860 at 858.920 kb on + strand, within Atu0860 at 858.920 kb on + strand, within Atu0860 at 858.920 kb on + strand, within Atu0860 at 858.920 kb on + strand, within Atu0860 at 858.928 kb on - strand, within Atu0860 at 858.928 kb on - strand, within Atu0860 at 858.928 kb on - strand, within Atu0860
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 856,426 + +0.1 856,454 + -0.9 856,510 - -0.5 856,510 - -0.4 856,526 - -0.6 856,544 + -0.1 856,552 - -0.7 856,805 - +0.4 856,815 - -0.1 856,890 - Atu0857 0.20 +0.9 856,981 + Atu0857 0.32 +1.7 856,988 - Atu0857 0.33 -0.5 857,063 + Atu0857 0.43 +0.4 857,071 + Atu0857 0.45 -0.8 857,084 + Atu0857 0.46 -1.2 857,140 + Atu0857 0.54 -0.1 857,148 - Atu0857 0.55 +1.5 857,183 - Atu0857 0.60 -0.5 857,278 + Atu0857 0.73 -0.2 857,349 + Atu0857 0.83 -0.3 857,351 - Atu0857 0.83 +0.7 857,378 - Atu0857 0.87 -2.1 857,536 - Atu0858 0.21 -0.2 857,554 - Atu0858 0.24 +0.0 857,564 - Atu0858 0.26 +0.0 857,649 - Atu0858 0.42 -1.0 857,676 + Atu0858 0.47 -0.3 857,677 + Atu0858 0.47 -0.3 857,684 - Atu0858 0.49 +0.4 857,684 - Atu0858 0.49 -0.2 857,691 - Atu0858 0.50 +1.5 857,702 - Atu0858 0.52 -0.2 857,718 - Atu0858 0.55 -0.1 857,757 + Atu0858 0.62 -0.6 857,792 - Atu0858 0.69 -0.5 857,878 - Atu0858 0.85 -1.2 857,878 - Atu0858 0.85 -0.9 858,058 - Atu0859 0.29 +0.8 858,108 + Atu0859 0.44 +1.1 858,108 + Atu0859 0.44 +1.1 858,177 + Atu0859 0.63 -0.2 858,187 + Atu0859 0.66 +0.6 858,340 - -0.2 858,368 + +2.8 858,376 - +0.0 858,422 - -2.4 858,422 - -0.4 858,526 - Atu0860 0.10 +0.1 858,537 - Atu0860 0.11 +1.7 858,755 - Atu0860 0.25 -0.5 858,806 + Atu0860 0.28 -2.1 858,808 + Atu0860 0.28 -1.3 858,819 + Atu0860 0.29 -0.2 858,920 + Atu0860 0.36 +0.2 858,920 + Atu0860 0.36 -0.5 858,920 + Atu0860 0.36 +0.5 858,920 + Atu0860 0.36 +1.1 858,920 + Atu0860 0.36 -0.6 858,928 - Atu0860 0.36 +0.4 858,928 - Atu0860 0.36 +0.1 858,928 - Atu0860 0.36 -0.1
Or see this region's nucleotide sequence