Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0291 and Atu0292 are separated by 3 nucleotides Atu0292 and Atu0293 are separated by 300 nucleotides
Atu0291: Atu0291 - hypothetical protein, at 285,781 to 286,653
Atu0291
Atu0292: Atu0292 - iron-sulfur cluster binding protein, at 286,657 to 287,637
Atu0292
Atu0293: Atu0293 - glutathione S-transferase, at 287,938 to 288,630
Atu0293
Position (kb) 286
287
288 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 285.777 kb on + strand at 285.965 kb on - strand, within Atu0291 at 285.966 kb on + strand, within Atu0291 at 285.970 kb on - strand, within Atu0291 at 285.985 kb on + strand, within Atu0291 at 286.004 kb on + strand, within Atu0291 at 286.004 kb on + strand, within Atu0291 at 286.004 kb on + strand, within Atu0291 at 286.007 kb on - strand, within Atu0291 at 286.012 kb on - strand, within Atu0291 at 286.144 kb on - strand, within Atu0291 at 286.197 kb on + strand, within Atu0291 at 286.229 kb on + strand, within Atu0291 at 286.229 kb on + strand, within Atu0291 at 286.243 kb on - strand, within Atu0291 at 286.283 kb on + strand, within Atu0291 at 286.373 kb on + strand, within Atu0291 at 286.455 kb on + strand, within Atu0291 at 286.554 kb on - strand, within Atu0291 at 286.561 kb on + strand, within Atu0291 at 286.588 kb on - strand at 286.690 kb on + strand at 286.819 kb on + strand, within Atu0292 at 286.822 kb on - strand, within Atu0292 at 286.822 kb on - strand, within Atu0292 at 286.941 kb on + strand, within Atu0292 at 286.983 kb on - strand, within Atu0292 at 287.141 kb on - strand, within Atu0292 at 287.146 kb on - strand, within Atu0292 at 287.204 kb on + strand, within Atu0292 at 287.246 kb on - strand, within Atu0292 at 287.251 kb on - strand, within Atu0292 at 287.281 kb on + strand, within Atu0292 at 287.518 kb on - strand, within Atu0292 at 287.590 kb on - strand at 287.632 kb on + strand at 287.644 kb on + strand at 287.721 kb on + strand at 287.729 kb on - strand at 287.729 kb on - strand at 287.834 kb on + strand at 287.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 285,777 + -0.5 285,965 - Atu0291 0.21 +1.1 285,966 + Atu0291 0.21 -0.2 285,970 - Atu0291 0.22 -0.4 285,985 + Atu0291 0.23 -0.2 286,004 + Atu0291 0.26 -0.6 286,004 + Atu0291 0.26 +0.0 286,004 + Atu0291 0.26 -0.9 286,007 - Atu0291 0.26 -0.0 286,012 - Atu0291 0.26 +2.0 286,144 - Atu0291 0.42 +0.1 286,197 + Atu0291 0.48 -0.9 286,229 + Atu0291 0.51 +0.2 286,229 + Atu0291 0.51 +0.3 286,243 - Atu0291 0.53 +0.7 286,283 + Atu0291 0.58 -1.9 286,373 + Atu0291 0.68 +0.5 286,455 + Atu0291 0.77 -0.4 286,554 - Atu0291 0.89 +0.4 286,561 + Atu0291 0.89 -1.2 286,588 - -0.1 286,690 + -0.4 286,819 + Atu0292 0.17 +2.5 286,822 - Atu0292 0.17 +0.0 286,822 - Atu0292 0.17 -0.6 286,941 + Atu0292 0.29 +0.3 286,983 - Atu0292 0.33 -0.7 287,141 - Atu0292 0.49 +0.5 287,146 - Atu0292 0.50 -1.4 287,204 + Atu0292 0.56 +2.8 287,246 - Atu0292 0.60 +0.2 287,251 - Atu0292 0.61 -1.9 287,281 + Atu0292 0.64 +2.7 287,518 - Atu0292 0.88 -1.1 287,590 - +1.0 287,632 + -0.1 287,644 + -0.4 287,721 + -1.1 287,729 - +1.2 287,729 - -0.0 287,834 + +0.3 287,842 - +0.1
Or see this region's nucleotide sequence