Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0195 and Atu0196 are separated by 105 nucleotides Atu0196 and Atu0197 overlap by 4 nucleotides Atu0197 and Atu0198 overlap by 4 nucleotides
Atu0195: Atu0195 - gluconokinase, at 199,684 to 200,175
Atu0195
Atu0196: Atu0196 - ABC transporter, membrane spanning protein (proline/glycine/betaine), at 200,281 to 201,021
Atu0196
Atu0197: Atu0197 - ABC transporter, nucleotide binding/ATPase protein (proline/glycine/betaine), at 201,018 to 201,956
Atu0197
Atu0198: Atu0198 - ABC transporter, membrane spanning protein (proline/glycine/betaine), at 201,953 to 203,098
Atu0198
Position (kb) 201
202 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 200.134 kb on + strand at 200.141 kb on + strand at 200.149 kb on - strand at 200.199 kb on + strand at 200.207 kb on - strand at 200.395 kb on + strand, within Atu0196 at 200.481 kb on + strand, within Atu0196 at 200.544 kb on + strand, within Atu0196 at 200.605 kb on - strand, within Atu0196 at 200.605 kb on - strand, within Atu0196 at 200.605 kb on - strand, within Atu0196 at 200.813 kb on + strand, within Atu0196 at 200.816 kb on - strand, within Atu0196 at 200.816 kb on - strand, within Atu0196 at 200.865 kb on + strand, within Atu0196 at 200.889 kb on + strand, within Atu0196 at 201.066 kb on + strand at 201.085 kb on - strand at 201.128 kb on - strand, within Atu0197 at 201.134 kb on + strand, within Atu0197 at 201.181 kb on - strand, within Atu0197 at 201.207 kb on + strand, within Atu0197 at 201.215 kb on - strand, within Atu0197 at 201.306 kb on + strand, within Atu0197 at 201.306 kb on + strand, within Atu0197 at 201.429 kb on + strand, within Atu0197 at 201.429 kb on + strand, within Atu0197 at 201.437 kb on - strand, within Atu0197 at 201.524 kb on - strand, within Atu0197 at 201.586 kb on - strand, within Atu0197 at 201.597 kb on - strand, within Atu0197 at 201.691 kb on + strand, within Atu0197 at 201.853 kb on - strand, within Atu0197 at 201.874 kb on - strand at 201.970 kb on + strand at 202.000 kb on - strand at 202.001 kb on + strand at 202.050 kb on + strand at 202.060 kb on + strand at 202.060 kb on + strand at 202.067 kb on + strand at 202.067 kb on + strand at 202.067 kb on + strand at 202.075 kb on - strand, within Atu0198 at 202.163 kb on - strand, within Atu0198 at 202.243 kb on + strand, within Atu0198 at 202.251 kb on - strand, within Atu0198 at 202.251 kb on - strand, within Atu0198 at 202.251 kb on - strand, within Atu0198 at 202.382 kb on - strand, within Atu0198 at 202.434 kb on + strand, within Atu0198 at 202.442 kb on - strand, within Atu0198 at 202.442 kb on - strand, within Atu0198 at 202.468 kb on - strand, within Atu0198 at 202.481 kb on + strand, within Atu0198 at 202.481 kb on + strand, within Atu0198 at 202.481 kb on + strand, within Atu0198 at 202.481 kb on + strand, within Atu0198 at 202.481 kb on + strand, within Atu0198 at 202.489 kb on - strand, within Atu0198 at 202.510 kb on + strand, within Atu0198 at 202.596 kb on - strand, within Atu0198 at 202.623 kb on + strand, within Atu0198 at 202.631 kb on - strand, within Atu0198 at 202.722 kb on + strand, within Atu0198 at 202.730 kb on - strand, within Atu0198 at 202.766 kb on - strand, within Atu0198 at 202.824 kb on - strand, within Atu0198 at 202.956 kb on + strand, within Atu0198
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 200,134 + -0.2 200,141 + +0.8 200,149 - +0.6 200,199 + -0.6 200,207 - -0.2 200,395 + Atu0196 0.15 +0.7 200,481 + Atu0196 0.27 +0.3 200,544 + Atu0196 0.35 -0.2 200,605 - Atu0196 0.44 -0.9 200,605 - Atu0196 0.44 +0.4 200,605 - Atu0196 0.44 -0.4 200,813 + Atu0196 0.72 -0.2 200,816 - Atu0196 0.72 -0.6 200,816 - Atu0196 0.72 -0.3 200,865 + Atu0196 0.79 +4.8 200,889 + Atu0196 0.82 +0.5 201,066 + +2.1 201,085 - -0.6 201,128 - Atu0197 0.12 +1.6 201,134 + Atu0197 0.12 +0.5 201,181 - Atu0197 0.17 +0.2 201,207 + Atu0197 0.20 +0.7 201,215 - Atu0197 0.21 -0.4 201,306 + Atu0197 0.31 -0.5 201,306 + Atu0197 0.31 -1.3 201,429 + Atu0197 0.44 +0.4 201,429 + Atu0197 0.44 -0.8 201,437 - Atu0197 0.45 -1.0 201,524 - Atu0197 0.54 +0.2 201,586 - Atu0197 0.60 +0.3 201,597 - Atu0197 0.62 +0.2 201,691 + Atu0197 0.72 -0.2 201,853 - Atu0197 0.89 +0.3 201,874 - +0.2 201,970 + +0.2 202,000 - -0.5 202,001 + +0.8 202,050 + -0.5 202,060 + -0.1 202,060 + -0.6 202,067 + -0.0 202,067 + +0.1 202,067 + +0.8 202,075 - Atu0198 0.11 -0.6 202,163 - Atu0198 0.18 -0.5 202,243 + Atu0198 0.25 +0.3 202,251 - Atu0198 0.26 -0.6 202,251 - Atu0198 0.26 -0.2 202,251 - Atu0198 0.26 -0.8 202,382 - Atu0198 0.37 +0.3 202,434 + Atu0198 0.42 -0.7 202,442 - Atu0198 0.43 +0.3 202,442 - Atu0198 0.43 +0.2 202,468 - Atu0198 0.45 -0.3 202,481 + Atu0198 0.46 +0.1 202,481 + Atu0198 0.46 +0.1 202,481 + Atu0198 0.46 -0.7 202,481 + Atu0198 0.46 +0.6 202,481 + Atu0198 0.46 -0.1 202,489 - Atu0198 0.47 +0.0 202,510 + Atu0198 0.49 -0.4 202,596 - Atu0198 0.56 +0.2 202,623 + Atu0198 0.58 +1.1 202,631 - Atu0198 0.59 -0.4 202,722 + Atu0198 0.67 +0.4 202,730 - Atu0198 0.68 +0.6 202,766 - Atu0198 0.71 -2.3 202,824 - Atu0198 0.76 +1.6 202,956 + Atu0198 0.88 +0.2
Or see this region's nucleotide sequence