Strain Fitness in Pseudomonas putida KT2440 around PP_t59

Experiment: 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.
4,631,556	+				-0.0
4,631,602	+				-1.0
4,631,602	+				-0.3
4,631,602	+				-1.2
4,631,603	-				-0.4
4,631,603	-				-0.1
4,631,604	-				-0.5
4,631,847	+		PP_4096	0.25	-0.0
4,631,848	-		PP_4096	0.25	-0.6
4,631,916	+		PP_4096	0.35	+0.6
4,631,917	-		PP_4096	0.35	-0.3
4,632,087	+		PP_4096	0.58	-0.9
4,632,087	+		PP_4096	0.58	-0.4
4,632,091	+		PP_4096	0.59	+1.0
4,632,091	+		PP_4096	0.59	+1.0
4,632,091	+		PP_4096	0.59	-1.8
4,632,091	+		PP_4096	0.59	-0.5
4,632,092	-		PP_4096	0.59	+0.1
4,632,092	-		PP_4096	0.59	-0.4
4,632,092	-		PP_4096	0.59	+1.1
4,632,092	-		PP_4096	0.59	-2.0
4,632,092	-		PP_4096	0.59	+1.4
4,632,095	+		PP_4096	0.59	+0.0
4,632,095	+		PP_4096	0.59	-0.6
4,632,233	+		PP_4096	0.78	+0.1
4,632,233	+		PP_4096	0.78	+0.4
4,632,240	-		PP_4096	0.79	-1.0
4,632,240	-		PP_4096	0.79	-0.1
4,632,361	+				+0.6
4,632,383	+				-0.7
4,632,383	+				-0.1
4,632,383	+				-0.3
4,632,384	-				+0.2
4,632,384	-				+0.2
4,632,384	-				+0.1
4,632,394	-				+0.3
4,632,543	-				+2.6
4,632,543	-				+1.5
4,632,551	-				-1.3
4,633,289	-				-0.5
4,633,289	-				+2.6
4,633,289	-				+1.6
4,633,295	+				+0.7
4,633,310	-				-0.2
4,633,332	-				-0.7
4,633,332	-				-2.4