Strain Fitness in Pseudomonas putida KT2440 around PP_4632

Experiment: 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.
5,254,472	-		PP_4630	0.82	-0.5
5,254,485	+		PP_4630	0.84	+0.9
5,254,486	-		PP_4630	0.84	-0.7
5,254,521	-		PP_4630	0.88	-0.4
5,254,521	-		PP_4630	0.88	-0.8
5,254,639	+				-0.4
5,254,639	+				-0.1
5,254,640	-				-0.9
5,254,669	-				-0.7
5,254,696	+				+1.4
5,254,696	+				-1.2
5,254,696	+				+0.1
5,254,696	+				-1.2
5,254,696	+				-0.4
5,254,696	+				+0.3
5,254,697	-				-0.2
5,254,697	-				+1.3
5,254,697	-				+0.4
5,254,697	-				+2.6
5,254,697	-				+0.1
5,254,701	+				+0.4
5,254,701	+				+0.1
5,254,701	+				-0.7
5,254,701	+				+0.8
5,254,702	-				+1.0
5,254,702	-				+0.3
5,254,702	-				-0.4
5,254,705	-				-0.7
5,254,705	-				-0.3
5,254,705	-				+0.3
5,254,746	+				-2.0
5,254,746	+				+1.1
5,254,747	-				-0.6
5,254,747	-				-0.9
5,254,871	+				-1.4
5,254,872	-				-0.6
5,254,872	-				+0.4
5,254,883	-				-0.3
5,254,883	-				+0.1
5,255,112	+		PP_4631	0.42	+0.3
5,255,112	+		PP_4631	0.42	+0.8
5,255,351	+		PP_4631	0.84	-0.4
5,255,351	+		PP_4631	0.84	+0.3
5,255,351	+		PP_4631	0.84	-0.0
5,255,351	+		PP_4631	0.84	+0.6
5,255,352	-		PP_4631	0.85	-0.9
5,255,448	+				-0.6
5,255,448	+				+0.5
5,255,448	+				-0.5
5,255,448	+				+1.0
5,255,449	-				-0.2
5,255,449	-				-2.4
5,255,596	+		PP_4632	0.17	+1.7
5,255,597	-		PP_4632	0.17	+1.6
5,255,731	-		PP_4632	0.35	-0.0
5,255,819	+		PP_4632	0.47	-1.1
5,255,911	+		PP_4632	0.60	-0.8
5,255,928	-		PP_4632	0.62	-0.5
5,255,982	-		PP_4632	0.69	+1.4
5,255,982	-		PP_4632	0.69	+0.2
5,256,007	+		PP_4632	0.73	-1.9
5,256,129	-		PP_4632	0.89	+1.6
5,256,129	-		PP_4632	0.89	-1.7
5,256,129	-		PP_4632	0.89	-1.3
5,256,129	-		PP_4632	0.89	-1.0
5,256,147	-				+0.2
5,256,147	-				+0.2
5,256,147	-				+1.0
5,256,297	+		PP_4633	0.27	-1.3
5,256,298	-		PP_4633	0.27	-0.8
5,256,357	-		PP_4633	0.47	+0.4
5,256,419	+		PP_4633	0.68	+0.0
5,256,419	+		PP_4633	0.68	+2.6
5,256,432	-		PP_4633	0.72	+0.6
5,256,452	+		PP_4633	0.79	+0.8
5,256,453	-		PP_4633	0.79	-0.0
5,256,453	-		PP_4633	0.79	-0.1
5,256,521	+				-0.5
5,256,557	-		PP_5703	0.15	-0.5
5,256,557	-		PP_5703	0.15	+0.5
5,256,557	-		PP_5703	0.15	+2.6
5,256,557	-		PP_5703	0.15	-0.0
5,256,557	-		PP_5703	0.15	-1.4
5,256,557	-		PP_5703	0.15	-1.1
5,256,566	+		PP_5703	0.17	+0.6
5,256,591	+		PP_5703	0.25	-0.3
5,256,591	+		PP_5703	0.25	-0.3
5,256,591	+		PP_5703	0.25	-2.6
5,256,591	+		PP_5703	0.25	+0.2
5,256,592	-		PP_5703	0.25	-0.1
5,256,592	-		PP_5703	0.25	+0.3
5,256,592	-		PP_5703	0.25	-0.4
5,256,598	-		PP_5703	0.27	+0.0
5,256,598	-		PP_5703	0.27	-0.7
5,256,598	-		PP_5703	0.27	+0.3
5,256,598	-		PP_5703	0.27	+0.2
5,256,732	+		PP_5703	0.66	+0.6
5,257,067	+		PP_4634	0.19	+1.6
5,257,067	+		PP_4634	0.19	-0.7
5,257,068	-		PP_4634	0.19	-1.2
5,257,068	-		PP_4634	0.19	+0.7
5,257,072	-		PP_4634	0.20	-1.4
5,257,164	-		PP_4634	0.30	-0.1