Strain Fitness in Pseudomonas putida KT2440 around PP_4410

Experiment: 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.
5,002,719	+		PP_4409	0.35	-1.0
5,002,720	-		PP_4409	0.35	+0.5
5,002,813	+		PP_4409	0.42	-0.9
5,003,128	-		PP_4409	0.64	-0.2
5,003,146	+		PP_4409	0.65	+1.9
5,003,223	-		PP_4409	0.70	+1.0
5,003,352	+		PP_4409	0.79	-0.7
5,003,353	-		PP_4409	0.79	+1.4
5,003,390	-		PP_4409	0.82	+1.6
5,003,394	-		PP_4409	0.82	+0.9
5,003,654	-				+0.2
5,004,034	+		PP_4410	0.12	+0.1
5,004,187	+		PP_4410	0.16	+2.2
5,004,188	-		PP_4410	0.16	-0.4
5,004,470	-		PP_4410	0.25	+0.8
5,004,534	-		PP_4410	0.27	+0.3
5,004,568	+		PP_4410	0.28	+0.3
5,004,683	-		PP_4410	0.31	-1.3
5,004,694	+		PP_4410	0.32	+0.4
5,004,732	-		PP_4410	0.33	+0.1
5,004,775	-		PP_4410	0.34	+0.6
5,004,775	-		PP_4410	0.34	+0.7
5,004,777	-		PP_4410	0.34	+0.1
5,004,812	-		PP_4410	0.35	+1.5
5,004,817	+		PP_4410	0.35	-0.3
5,004,818	-		PP_4410	0.35	-1.5
5,004,818	-		PP_4410	0.35	+0.6
5,004,898	+		PP_4410	0.38	-0.7
5,005,087	-		PP_4410	0.44	+0.5
5,005,183	-				+2.6
5,005,219	+		PP_4410	0.48	+1.6
5,005,240	-		PP_4410	0.48	-0.2
5,005,242	+		PP_4410	0.48	+1.3
5,005,338	-		PP_4410	0.51	+0.3
5,005,559	-		PP_4410	0.58	+0.3
5,005,611	-		PP_4410	0.59	+1.3
5,005,809	-		PP_4410	0.65	+1.4
5,005,851	+		PP_4410	0.67	+1.3
5,005,902	-		PP_4410	0.68	-0.2
5,006,015	+		PP_4410	0.72	+0.1
5,006,201	+		PP_4410	0.77	+0.7
5,006,202	-		PP_4410	0.77	+1.9
5,006,215	+		PP_4410	0.78	-0.1
5,006,226	+		PP_4410	0.78	+0.3
5,006,227	-		PP_4410	0.78	+1.0
5,006,227	-		PP_4410	0.78	+0.2
5,006,228	+		PP_4410	0.78	-0.2
5,006,229	-		PP_4410	0.78	+0.0
5,006,393	-		PP_4410	0.83	+0.2
5,006,623	-				+1.2
5,006,771	+				-0.1
5,007,052	-				-1.5
5,007,141	-				+1.6
5,007,386	+		PP_5674	0.61	+4.2
5,007,386	+		PP_5674	0.61	+2.6
5,007,518	+		PP_5674	0.83	+0.7
5,007,536	+		PP_5674	0.86	-1.4
5,007,536	+		PP_5674	0.86	-0.6
5,007,589	+				+0.1
5,007,635	-				-0.0
5,007,635	-				-1.8
5,007,711	+				-1.1
5,007,712	-				-0.4
5,007,717	+				+0.2
5,007,718	-				+0.2
5,007,718	-				-1.6
5,007,767	+				+1.4
5,007,767	+				-0.6
5,007,768	-				-2.9
5,007,784	-				+0.6
5,007,784	-				-0.3
5,007,839	+				-0.2
5,007,840	-				+0.5
5,007,880	+				-0.7
5,007,881	-				-0.5
5,007,909	+				-0.5
5,007,909	+				+0.4
5,007,913	+				-0.2
5,007,913	+				+0.0
5,007,913	+				+0.0
5,007,914	-				+0.8
5,007,914	-				+0.2
5,007,914	-				-1.4
5,007,914	-				+1.0
5,007,914	-				-1.1
5,007,914	-				+0.2
5,007,914	-				-0.1
5,007,923	-				-0.1
5,007,948	-				-0.2