Strain Fitness in Pseudomonas putida KT2440 around PP_3458

Experiment: 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.
3,919,593	-		PP_3457	0.32	+2.6
3,919,825	-		PP_3457	0.72	+0.1
3,919,947	+				+0.5
3,920,242	+				-0.2
3,920,242	+				+0.6
3,920,242	+				-1.4
3,920,301	-		PP_3458	0.13	-1.0
3,920,430	+		PP_3458	0.21	-0.0
3,920,431	-		PP_3458	0.21	-0.3
3,920,438	+		PP_3458	0.21	-0.4
3,920,438	+		PP_3458	0.21	-0.4
3,920,439	-		PP_3458	0.21	-0.2
3,920,439	-		PP_3458	0.21	+0.6
3,920,439	-		PP_3458	0.21	-0.1
3,920,546	+		PP_3458	0.28	-1.5
3,920,948	+		PP_3458	0.52	-1.2
3,921,012	-		PP_3458	0.55	-0.4
3,921,074	+		PP_3458	0.59	+2.0
3,921,074	+		PP_3458	0.59	-0.1
3,921,090	+		PP_3458	0.60	-0.9
3,921,090	+		PP_3458	0.60	-0.2
3,921,091	-		PP_3458	0.60	+0.0
3,921,144	-		PP_3458	0.63	+0.4
3,921,144	-		PP_3458	0.63	+1.0
3,921,144	-		PP_3458	0.63	-0.6
3,921,434	+		PP_3458	0.80	+0.6
3,921,749	+				-1.3
3,921,750	-				-2.2
3,921,827	+				-0.3
3,921,934	+				+1.0
3,921,934	+				-0.5
3,922,026	+		PP_3459	0.11	+1.4
3,922,062	+		PP_3459	0.14	+1.0
3,922,062	+		PP_3459	0.14	-0.8
3,922,063	-		PP_3459	0.14	-0.3
3,922,065	+		PP_3459	0.14	-1.0
3,922,065	+		PP_3459	0.14	-1.0
3,922,066	-		PP_3459	0.14	-1.3
3,922,066	-		PP_3459	0.14	+0.0
3,922,066	-		PP_3459	0.14	-0.9
3,922,066	-		PP_3459	0.14	-0.6
3,922,066	-		PP_3459	0.14	+0.5
3,922,066	-		PP_3459	0.14	+0.2
3,922,116	+		PP_3459	0.19	+1.4
3,922,117	-		PP_3459	0.19	+0.4
3,922,143	+		PP_3459	0.21	-0.2
3,922,144	-		PP_3459	0.21	-0.4
3,922,185	+		PP_3459	0.25	+0.4
3,922,185	+		PP_3459	0.25	-0.8
3,922,186	-		PP_3459	0.25	-0.9
3,922,186	-		PP_3459	0.25	-0.7
3,922,252	-		PP_3459	0.30	-0.2
3,922,257	+		PP_3459	0.31	+0.6
3,922,314	+		PP_3459	0.36	-0.7
3,922,314	+		PP_3459	0.36	+0.7
3,922,315	-		PP_3459	0.36	+1.3
3,922,315	-		PP_3459	0.36	+0.6
3,922,359	+		PP_3459	0.40	-0.5
3,922,360	-		PP_3459	0.40	-0.9
3,922,360	-		PP_3459	0.40	-1.0
3,922,360	-		PP_3459	0.40	-2.6
3,922,381	-		PP_3459	0.42	+0.2
3,922,381	-		PP_3459	0.42	+0.2
3,922,449	+		PP_3459	0.48	+0.8
3,922,450	-				+1.2
3,922,450	-		PP_3459	0.48	+1.2
3,922,450	-		PP_3459	0.48	-0.0
3,922,450	-		PP_3459	0.48	+0.0
3,922,450	-		PP_3459	0.48	-0.1
3,922,471	-		PP_3459	0.50	+1.2
3,922,471	-		PP_3459	0.50	-0.0
3,922,471	-		PP_3459	0.50	+1.6
3,922,503	+		PP_3459	0.52	-0.8
3,922,504	-		PP_3459	0.53	+0.2
3,922,596	+		PP_3459	0.61	+0.5
3,922,596	+		PP_3459	0.61	-1.9
3,922,635	+		PP_3459	0.64	+0.3
3,922,635	+		PP_3459	0.64	-1.1
3,922,635	+		PP_3459	0.64	+0.2
3,922,635	+		PP_3459	0.64	-0.1
3,922,636	-		PP_3459	0.64	-0.7
3,922,636	-		PP_3459	0.64	+0.4
3,922,636	-		PP_3459	0.64	+0.5
3,922,671	+		PP_3459	0.67	+0.2
3,922,671	+		PP_3459	0.67	-1.6
3,922,672	-		PP_3459	0.67	+0.4
3,922,672	-		PP_3459	0.67	+0.8