Strain Fitness in Pseudomonas putida KT2440 around PP_2930

Experiment: 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.
3,331,250	+		PP_2929	0.32	-0.2
3,331,250	+		PP_2929	0.32	+0.4
3,331,320	-		PP_2929	0.38	+2.0
3,331,376	-		PP_2929	0.43	+2.6
3,331,382	+		PP_2929	0.44	-0.7
3,331,382	+		PP_2929	0.44	-0.2
3,331,383	-		PP_2929	0.44	+0.6
3,331,616	+		PP_2929	0.65	+1.6
3,331,770	+		PP_2929	0.79	+0.0
3,331,771	-		PP_2929	0.79	+1.6
3,331,772	+		PP_2929	0.79	-1.2
3,331,772	+		PP_2929	0.79	+0.2
3,331,773	-		PP_2929	0.79	+0.4
3,331,773	-		PP_2929	0.79	-0.6
3,331,773	-		PP_2929	0.79	+1.0
3,331,839	+		PP_2929	0.85	+1.3
3,331,850	+		PP_2929	0.86	+0.7
3,331,850	+		PP_2929	0.86	-1.5
3,331,850	+		PP_2929	0.86	-0.6
3,331,850	+		PP_2929	0.86	-1.1
3,331,851	-		PP_2929	0.86	+2.6
3,331,851	-		PP_2929	0.86	-0.8
3,331,851	-		PP_2929	0.86	+0.2
3,331,851	-		PP_2929	0.86	-0.2
3,331,851	-		PP_2929	0.86	-0.2
3,331,851	-		PP_2929	0.86	+1.8
3,331,935	-				+2.6
3,331,982	+				-0.1
3,331,982	+				-1.4
3,331,983	-				+0.5
3,331,983	-				-0.2
3,331,983	-				-0.4
3,332,004	-				-0.2
3,332,004	-				+2.6
3,332,104	-				-0.7
3,332,135	+				-0.7
3,332,136	-				+0.7
3,332,139	-				+0.2
3,332,162	+				-0.2
3,332,162	+				-0.7
3,332,163	-				-1.2
3,332,293	+		PP_2930	0.12	+0.2
3,332,293	+		PP_2930	0.12	+0.8
3,332,293	+		PP_2930	0.12	+1.4
3,332,293	+		PP_2930	0.12	+0.6
3,332,293	+		PP_2930	0.12	+2.6
3,332,294	-		PP_2930	0.12	+2.6
3,332,294	-		PP_2930	0.12	-0.1
3,332,294	-		PP_2930	0.12	+0.3
3,332,294	-		PP_2930	0.12	+0.3
3,332,896	+		PP_2930	0.77	+0.6
3,332,983	-		PP_2930	0.87	+0.4
3,333,041	+				-2.0
3,333,041	+				-0.6
3,333,041	+				-1.6
3,333,042	-				-1.0
3,333,042	-				-0.4
3,333,119	+				+0.4
3,333,119	+				-0.4
3,333,119	+				+0.6
3,333,138	+				-0.1
3,333,138	+				-1.6
3,333,138	+				+0.2
3,333,138	+				-0.9
3,333,138	+				+1.0
3,333,139	-				-0.2
3,333,139	-				+0.2
3,333,139	-				+0.8
3,333,147	+				-0.9
3,333,148	-				-0.3
3,333,341	+		PP_2931	0.34	+0.8
3,333,342	-		PP_2931	0.34	+1.0
3,333,491	-		PP_2931	0.55	+1.5
3,333,491	-		PP_2931	0.55	-0.4
3,333,770	-				-0.3
3,333,853	-				-0.9
3,333,949	+				+0.5
3,333,984	-				-0.7
3,333,984	-				-0.1