Strain Fitness in Pseudomonas putida KT2440 around PP_2567

Experiment: 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.
2,933,311	+		PP_2566	0.84	+0.9
2,933,312	-		PP_2566	0.84	-1.2
2,933,312	-		PP_2566	0.84	+0.6
2,933,312	-		PP_2566	0.84	-0.0
2,933,596	+		PP_2566	0.90	+0.1
2,933,597	-		PP_2566	0.90	+0.0
2,933,597	-		PP_2566	0.90	+0.3
2,933,597	-		PP_2566	0.90	+0.8
2,933,597	-		PP_2566	0.90	-0.0
2,933,779	+				-0.1
2,933,780	-				+1.6
2,933,780	-				-1.1
2,933,793	+				+0.9
2,933,954	-				+1.0
2,933,995	+				-0.3
2,934,020	+				+0.1
2,934,020	+				-0.6
2,934,055	-				-1.1
2,934,130	-				+1.0
2,934,130	-				-0.4
2,934,162	-				+0.3
2,934,162	-				-1.0
2,934,165	+				-0.1
2,934,165	+				-0.4
2,934,166	-				-1.3
2,934,166	-				-0.1
2,934,166	-				-0.4
2,934,192	+				-2.4
2,934,319	-				+0.3
2,934,370	+				-1.4
2,934,379	-		PP_2567	0.10	+0.6
2,934,512	+		PP_2567	0.25	+0.1
2,934,513	-		PP_2567	0.25	+0.8
2,934,515	+		PP_2567	0.25	-1.8
2,934,515	+		PP_2567	0.25	-1.6
2,934,515	+		PP_2567	0.25	-0.2
2,934,516	-		PP_2567	0.25	+0.2
2,934,516	-		PP_2567	0.25	-0.4
2,934,516	-		PP_2567	0.25	+1.6
2,934,607	+		PP_2567	0.35	-1.1
2,934,609	+		PP_2567	0.35	-3.0
2,934,609	+		PP_2567	0.35	-0.3
2,934,609	+		PP_2567	0.35	+0.7
2,934,610	-		PP_2567	0.35	+0.4
2,934,744	+		PP_2567	0.50	+0.6
2,934,744	-		PP_2567	0.50	-0.6
2,934,745	-		PP_2567	0.50	-0.3
2,934,888	+		PP_2567	0.65	-1.0
2,934,888	+		PP_2567	0.65	-1.0
2,934,889	-		PP_2567	0.65	-0.1
2,934,905	+		PP_2567	0.67	-0.6
2,934,933	+		PP_2567	0.70	-1.0
2,934,933	+		PP_2567	0.70	-0.4
2,935,185	+				-0.5
2,935,186	-				+0.1
2,935,208	+				-0.1
2,935,242	+				-0.9
2,935,243	-				-0.5
2,935,243	-				-1.9
2,935,257	-				+1.0
2,935,643	+		PP_2568	0.85	-2.6
2,935,824	+				-0.5
2,935,825	-				+0.0
2,936,064	+				-0.2
2,936,064	+				+0.9
2,936,064	+				+1.0
2,936,065	-				-1.4
2,936,075	+				+0.7
2,936,075	+				+0.2
2,936,076	-				-0.1
2,936,085	-				+0.4
2,936,085	-				+0.1