Strain Fitness in Pseudomonas putida KT2440 around PP_0716

Experiment: 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0715 and PP_0716 overlap by 4 nucleotidesPP_0716 and PP_0717 overlap by 11 nucleotides PP_0715: PP_0715 - Outer membrane efflux protein, at 830,727 to 832,241 _0715 PP_0716: PP_0716 - HlyD family secretion protein, at 832,238 to 833,335 _0716 PP_0717: PP_0717 - conserved membrane protein of unknown function, DUF2955 family, at 833,325 to 834,347 _0717 Position (kb) 832 833 834Strain fitness (log2 ratio) -2 -1 0 1 2at 831.264 kb on + strand, within PP_0715at 831.264 kb on + strand, within PP_0715at 831.265 kb on - strand, within PP_0715at 831.265 kb on - strand, within PP_0715at 831.408 kb on + strand, within PP_0715at 831.408 kb on + strand, within PP_0715at 831.409 kb on - strand, within PP_0715at 831.409 kb on - strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.470 kb on - strand, within PP_0715at 831.470 kb on - strand, within PP_0715at 831.470 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715at 831.780 kb on + strand, within PP_0715at 831.802 kb on + strand, within PP_0715at 831.802 kb on + strand, within PP_0715at 831.802 kb on + strand, within PP_0715at 831.802 kb on + strand, within PP_0715at 831.802 kb on + strand, within PP_0715at 831.803 kb on - strand, within PP_0715at 831.824 kb on - strand, within PP_0715at 831.843 kb on + strand, within PP_0715at 832.054 kb on - strand, within PP_0715at 832.054 kb on - strand, within PP_0715at 832.098 kb on + strandat 832.098 kb on + strandat 832.098 kb on + strandat 832.099 kb on - strandat 832.099 kb on - strandat 832.099 kb on - strandat 832.099 kb on - strandat 832.287 kb on + strandat 832.288 kb on - strandat 832.288 kb on - strandat 832.328 kb on + strandat 832.328 kb on + strandat 832.329 kb on - strandat 832.348 kb on + strand, within PP_0716at 832.348 kb on + strand, within PP_0716at 832.348 kb on + strand, within PP_0716at 832.349 kb on - strand, within PP_0716at 832.349 kb on - strand, within PP_0716at 832.355 kb on + strand, within PP_0716at 832.382 kb on + strand, within PP_0716at 832.382 kb on + strand, within PP_0716at 832.382 kb on + strand, within PP_0716at 832.382 kb on + strand, within PP_0716at 832.383 kb on - strand, within PP_0716at 832.383 kb on - strand, within PP_0716at 832.383 kb on - strand, within PP_0716at 832.567 kb on + strand, within PP_0716at 832.853 kb on - strand, within PP_0716at 832.913 kb on + strand, within PP_0716at 832.913 kb on + strand, within PP_0716at 832.913 kb on + strand, within PP_0716at 832.914 kb on - strand, within PP_0716at 832.928 kb on - strand, within PP_0716at 832.951 kb on + strand, within PP_0716at 832.969 kb on - strand, within PP_0716at 832.969 kb on - strand, within PP_0716at 833.068 kb on + strand, within PP_0716at 833.069 kb on - strand, within PP_0716at 833.069 kb on - strand, within PP_0716at 833.069 kb on - strand, within PP_0716at 833.069 kb on - strand, within PP_0716at 833.070 kb on + strand, within PP_0716at 833.071 kb on - strand, within PP_0716at 833.071 kb on - strand, within PP_0716at 833.071 kb on - strand, within PP_0716at 833.141 kb on - strand, within PP_0716at 833.183 kb on - strand, within PP_0716at 833.324 kb on + strandat 833.325 kb on - strandat 833.325 kb on - strandat 833.579 kb on - strand, within PP_0717at 833.613 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.916 kb on + strand, within PP_0717at 833.916 kb on + strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 834.088 kb on + strand, within PP_0717at 834.123 kb on + strand, within PP_0717at 834.123 kb on + strand, within PP_0717at 834.124 kb on - strand, within PP_0717at 834.157 kb on - strand, within PP_0717at 834.189 kb on + strand, within PP_0717at 834.234 kb on + strand, within PP_0717at 834.234 kb on + strand, within PP_0717at 834.234 kb on + strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.255 kb on - strandat 834.255 kb on - strandat 834.283 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.
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831,264 + PP_0715 0.35 -0.3
831,264 + PP_0715 0.35 +0.1
831,265 - PP_0715 0.36 -0.8
831,265 - PP_0715 0.36 +0.5
831,408 + PP_0715 0.45 +0.3
831,408 + PP_0715 0.45 -0.6
831,409 - PP_0715 0.45 -0.1
831,409 - PP_0715 0.45 -0.4
831,469 + PP_0715 0.49 +1.1
831,469 + PP_0715 0.49 +1.5
831,469 + PP_0715 0.49 +0.9
831,469 + PP_0715 0.49 +0.2
831,469 + PP_0715 0.49 +0.3
831,469 + PP_0715 0.49 -0.2
831,470 - PP_0715 0.49 +1.6
831,470 - PP_0715 0.49 +0.5
831,470 - PP_0715 0.49 -0.4
831,569 - PP_0715 0.56 +0.3
831,569 - PP_0715 0.56 +1.8
831,569 - PP_0715 0.56 +0.8
831,569 - PP_0715 0.56 -0.4
831,569 - PP_0715 0.56 -0.6
831,569 - PP_0715 0.56 -1.1
831,780 + PP_0715 0.70 +0.5
831,802 + PP_0715 0.71 -1.8
831,802 + PP_0715 0.71 +0.6
831,802 + PP_0715 0.71 +0.5
831,802 + PP_0715 0.71 -0.7
831,802 + PP_0715 0.71 +2.6
831,803 - PP_0715 0.71 -1.6
831,824 - PP_0715 0.72 -0.4
831,843 + PP_0715 0.74 -0.4
832,054 - PP_0715 0.88 -0.7
832,054 - PP_0715 0.88 +0.9
832,098 + -1.4
832,098 + +0.6
832,098 + -0.8
832,099 - +0.1
832,099 - +0.1
832,099 - +1.6
832,099 - +2.6
832,287 + +1.1
832,288 - -1.1
832,288 - -0.9
832,328 + -0.7
832,328 + -0.5
832,329 - -0.7
832,348 + PP_0716 0.10 +0.6
832,348 + PP_0716 0.10 +1.3
832,348 + PP_0716 0.10 +0.6
832,349 - PP_0716 0.10 -2.7
832,349 - PP_0716 0.10 +0.1
832,355 + PP_0716 0.11 -0.8
832,382 + PP_0716 0.13 +0.2
832,382 + PP_0716 0.13 -0.6
832,382 + PP_0716 0.13 -0.9
832,382 + PP_0716 0.13 +0.8
832,383 - PP_0716 0.13 -0.7
832,383 - PP_0716 0.13 -1.8
832,383 - PP_0716 0.13 -0.1
832,567 + PP_0716 0.30 -0.5
832,853 - PP_0716 0.56 +0.3
832,913 + PP_0716 0.61 -1.2
832,913 + PP_0716 0.61 -0.1
832,913 + PP_0716 0.61 -0.5
832,914 - PP_0716 0.62 -1.2
832,928 - PP_0716 0.63 -0.4
832,951 + PP_0716 0.65 -0.7
832,969 - PP_0716 0.67 -0.9
832,969 - PP_0716 0.67 +0.3
833,068 + PP_0716 0.76 +2.6
833,069 - PP_0716 0.76 -0.2
833,069 - PP_0716 0.76 -0.3
833,069 - PP_0716 0.76 +0.1
833,069 - PP_0716 0.76 -1.7
833,070 + PP_0716 0.76 -0.8
833,071 - PP_0716 0.76 +0.1
833,071 - PP_0716 0.76 -1.2
833,071 - PP_0716 0.76 -0.6
833,141 - PP_0716 0.82 -1.2
833,183 - PP_0716 0.86 +0.5
833,324 + -0.1
833,325 - -0.3
833,325 - -1.3
833,579 - PP_0717 0.25 -0.4
833,613 + PP_0717 0.28 +1.2
833,774 + PP_0717 0.44 -2.1
833,774 + PP_0717 0.44 +0.3
833,774 + PP_0717 0.44 +0.5
833,774 + PP_0717 0.44 +0.3
833,774 + PP_0717 0.44 +0.8
833,774 + PP_0717 0.44 -0.4
833,774 + PP_0717 0.44 -2.1
833,774 + PP_0717 0.44 +0.3
833,775 - PP_0717 0.44 -0.4
833,775 - PP_0717 0.44 +0.6
833,775 - PP_0717 0.44 +0.0
833,775 - PP_0717 0.44 +0.1
833,775 - PP_0717 0.44 -0.1
833,775 - PP_0717 0.44 -1.3
833,916 + PP_0717 0.58 -1.0
833,916 + PP_0717 0.58 +1.7
833,917 - PP_0717 0.58 -1.4
833,917 - PP_0717 0.58 +1.0
833,917 - PP_0717 0.58 -1.3
833,917 - PP_0717 0.58 -0.5
834,088 + PP_0717 0.75 -1.0
834,123 + PP_0717 0.78 -1.2
834,123 + PP_0717 0.78 +1.8
834,124 - PP_0717 0.78 +0.7
834,157 - PP_0717 0.81 -1.0
834,189 + PP_0717 0.84 -0.7
834,234 + PP_0717 0.89 +0.8
834,234 + PP_0717 0.89 +0.5
834,234 + PP_0717 0.89 +1.7
834,235 - PP_0717 0.89 -0.4
834,235 - PP_0717 0.89 -0.5
834,235 - PP_0717 0.89 +0.6
834,235 - PP_0717 0.89 -0.1
834,255 - +0.8
834,255 - +1.9
834,283 - +0.3

Or see this region's nucleotide sequence