Strain Fitness in Pseudomonas putida KT2440 around PP_0487

Experiment: 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0486 and PP_0487 are separated by 146 nucleotidesPP_0487 and PP_0488 are separated by 21 nucleotidesPP_0488 and PP_0489 are separated by 147 nucleotides PP_0486: PP_0486 - Transcriptional regulator, GntR family, at 571,665 to 573,089 _0486 PP_0487: PP_0487 - conserved membrane protein of unknown function, at 573,236 to 574,033 _0487 PP_0488: PP_0488 - putative NADP-dependent dehydrogenase HI_1430, at 574,055 to 574,816 _0488 PP_0489: PP_0489 - formate dehydrogenase-O major subunit, at 574,964 to 578,032 _0489 Position (kb) 573 574 575Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 572.454 kb on + strand, within PP_0486at 572.455 kb on - strand, within PP_0486at 572.455 kb on - strand, within PP_0486at 572.455 kb on - strand, within PP_0486at 572.556 kb on + strand, within PP_0486at 572.556 kb on + strand, within PP_0486at 572.556 kb on + strand, within PP_0486at 572.557 kb on - strand, within PP_0486at 572.559 kb on + strand, within PP_0486at 572.559 kb on + strand, within PP_0486at 572.560 kb on - strand, within PP_0486at 572.560 kb on - strand, within PP_0486at 572.595 kb on + strand, within PP_0486at 572.647 kb on + strand, within PP_0486at 572.648 kb on - strand, within PP_0486at 572.648 kb on - strand, within PP_0486at 572.800 kb on - strand, within PP_0486at 572.878 kb on + strand, within PP_0486at 572.905 kb on - strand, within PP_0486at 573.031 kb on + strandat 573.031 kb on + strandat 573.032 kb on - strandat 573.084 kb on + strandat 573.085 kb on - strandat 573.107 kb on + strandat 573.108 kb on - strandat 573.108 kb on - strandat 573.108 kb on - strandat 573.108 kb on - strandat 573.116 kb on + strandat 573.117 kb on - strandat 573.140 kb on + strandat 573.145 kb on + strandat 573.173 kb on + strandat 573.223 kb on - strandat 573.223 kb on - strandat 573.223 kb on - strandat 573.248 kb on - strandat 573.267 kb on - strandat 573.267 kb on - strandat 573.267 kb on - strandat 573.300 kb on + strandat 573.300 kb on + strandat 573.301 kb on - strandat 573.301 kb on - strandat 573.301 kb on - strandat 573.495 kb on + strand, within PP_0487at 573.495 kb on + strand, within PP_0487at 573.496 kb on - strand, within PP_0487at 573.526 kb on - strand, within PP_0487at 573.533 kb on + strand, within PP_0487at 573.534 kb on - strand, within PP_0487at 573.610 kb on + strand, within PP_0487at 573.716 kb on + strand, within PP_0487at 573.716 kb on + strand, within PP_0487at 573.717 kb on - strand, within PP_0487at 573.717 kb on - strand, within PP_0487at 573.717 kb on - strand, within PP_0487at 573.717 kb on - strand, within PP_0487at 573.770 kb on + strand, within PP_0487at 573.770 kb on + strand, within PP_0487at 573.878 kb on + strand, within PP_0487at 573.878 kb on + strand, within PP_0487at 573.878 kb on + strand, within PP_0487at 573.879 kb on - strand, within PP_0487at 574.043 kb on - strandat 574.043 kb on - strandat 574.043 kb on - strandat 574.071 kb on + strandat 574.195 kb on - strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.473 kb on - strand, within PP_0488at 574.473 kb on - strand, within PP_0488at 574.496 kb on + strand, within PP_0488at 574.496 kb on + strand, within PP_0488at 574.497 kb on - strand, within PP_0488at 574.658 kb on + strand, within PP_0488at 574.659 kb on - strand, within PP_0488at 574.668 kb on + strand, within PP_0488at 574.668 kb on + strand, within PP_0488at 574.668 kb on + strand, within PP_0488at 574.668 kb on + strand, within PP_0488at 574.668 kb on + strand, within PP_0488at 574.669 kb on - strand, within PP_0488at 574.669 kb on - strand, within PP_0488at 574.669 kb on - strand, within PP_0488at 574.669 kb on - strand, within PP_0488at 574.738 kb on + strand, within PP_0488at 574.739 kb on - strand, within PP_0488at 574.744 kb on + strandat 574.744 kb on + strandat 574.744 kb on + strandat 574.745 kb on - strandat 574.745 kb on - strandat 574.745 kb on - strandat 574.866 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.
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572,454 + PP_0486 0.55 +1.4
572,455 - PP_0486 0.55 -1.0
572,455 - PP_0486 0.55 -0.9
572,455 - PP_0486 0.55 +0.2
572,556 + PP_0486 0.63 -0.5
572,556 + PP_0486 0.63 -1.4
572,556 + PP_0486 0.63 +1.0
572,557 - PP_0486 0.63 -0.2
572,559 + PP_0486 0.63 -0.8
572,559 + PP_0486 0.63 +0.2
572,560 - PP_0486 0.63 -1.0
572,560 - PP_0486 0.63 +0.3
572,595 + PP_0486 0.65 -0.0
572,647 + PP_0486 0.69 +0.1
572,648 - PP_0486 0.69 +0.4
572,648 - PP_0486 0.69 +0.4
572,800 - PP_0486 0.80 +2.6
572,878 + PP_0486 0.85 +1.4
572,905 - PP_0486 0.87 -0.8
573,031 + -2.2
573,031 + +0.5
573,032 - +0.0
573,084 + -1.4
573,085 - -0.4
573,107 + +0.6
573,108 - +0.7
573,108 - +0.1
573,108 - -0.5
573,108 - +0.6
573,116 + +1.3
573,117 - -1.1
573,140 + +1.6
573,145 + -0.2
573,173 + -0.2
573,223 - -1.1
573,223 - -0.0
573,223 - -0.0
573,248 - +1.6
573,267 - -0.0
573,267 - +0.1
573,267 - +0.8
573,300 + +0.8
573,300 + +0.7
573,301 - -0.2
573,301 - -0.0
573,301 - -0.3
573,495 + PP_0487 0.32 -0.9
573,495 + PP_0487 0.32 -0.8
573,496 - PP_0487 0.33 -0.4
573,526 - PP_0487 0.36 -1.4
573,533 + PP_0487 0.37 -0.5
573,534 - PP_0487 0.37 -0.2
573,610 + PP_0487 0.47 -0.7
573,716 + PP_0487 0.60 -2.5
573,716 + PP_0487 0.60 -1.2
573,717 - PP_0487 0.60 -0.2
573,717 - PP_0487 0.60 -0.1
573,717 - PP_0487 0.60 +0.3
573,717 - PP_0487 0.60 -1.1
573,770 + PP_0487 0.67 -0.0
573,770 + PP_0487 0.67 +2.6
573,878 + PP_0487 0.80 -0.7
573,878 + PP_0487 0.80 -1.8
573,878 + PP_0487 0.80 -1.3
573,879 - PP_0487 0.81 -1.9
574,043 - -1.5
574,043 - +0.3
574,043 - -0.1
574,071 + +0.4
574,195 - PP_0488 0.18 +0.6
574,472 + PP_0488 0.55 +0.5
574,472 + PP_0488 0.55 -0.2
574,472 + PP_0488 0.55 +2.6
574,472 + PP_0488 0.55 -0.0
574,472 + PP_0488 0.55 -1.0
574,472 + PP_0488 0.55 +0.3
574,473 - PP_0488 0.55 +1.6
574,473 - PP_0488 0.55 +0.5
574,496 + PP_0488 0.58 -0.4
574,496 + PP_0488 0.58 -1.0
574,497 - PP_0488 0.58 +0.3
574,658 + PP_0488 0.79 -0.8
574,659 - PP_0488 0.79 -0.2
574,668 + PP_0488 0.80 +1.4
574,668 + PP_0488 0.80 +0.8
574,668 + PP_0488 0.80 +0.2
574,668 + PP_0488 0.80 +0.8
574,668 + PP_0488 0.80 +0.1
574,669 - PP_0488 0.81 -0.3
574,669 - PP_0488 0.81 -1.8
574,669 - PP_0488 0.81 +1.0
574,669 - PP_0488 0.81 -0.4
574,738 + PP_0488 0.90 -0.5
574,739 - PP_0488 0.90 -2.4
574,744 + +0.4
574,744 + -2.8
574,744 + +0.8
574,745 - -0.8
574,745 - -0.8
574,745 - -0.7
574,866 + -1.5

Or see this region's nucleotide sequence