Strain Fitness in Pseudomonas putida KT2440 around PP_0280

Experiment: 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0279 and PP_0280 are separated by 128 nucleotidesPP_0280 and PP_0281 overlap by 1 nucleotidesPP_0281 and PP_0282 are separated by 54 nucleotides PP_0279: PP_0279 - conserved protein of unknown function, at 336,545 to 337,750 _0279 PP_0280: PP_0280 - Amino acid ABC transporter, permease protein, at 337,879 to 338,568 _0280 PP_0281: PP_0281 - Amino acid ABC transporter, permease protein, at 338,568 to 339,260 _0281 PP_0282: PP_0282 - L-arginine ABC transporter - periplasmic binding subunit, at 339,315 to 340,067 _0282 Position (kb) 337 338 339Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 337.047 kb on + strand, within PP_0279at 337.071 kb on + strand, within PP_0279at 337.072 kb on - strand, within PP_0279at 337.072 kb on - strand, within PP_0279at 337.133 kb on + strand, within PP_0279at 337.133 kb on + strand, within PP_0279at 337.134 kb on - strand, within PP_0279at 337.134 kb on - strand, within PP_0279at 337.175 kb on - strand, within PP_0279at 337.290 kb on + strand, within PP_0279at 337.290 kb on + strand, within PP_0279at 337.291 kb on - strand, within PP_0279at 337.291 kb on - strand, within PP_0279at 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.722 kb on - strandat 337.722 kb on - strandat 337.722 kb on - strandat 337.722 kb on - strandat 337.808 kb on + strandat 337.809 kb on - strandat 337.809 kb on - strandat 337.810 kb on + strandat 337.811 kb on - strandat 337.811 kb on - strandat 337.834 kb on + strandat 337.835 kb on - strandat 337.961 kb on + strand, within PP_0280at 337.961 kb on + strand, within PP_0280at 337.962 kb on - strand, within PP_0280at 337.962 kb on - strand, within PP_0280at 338.000 kb on + strand, within PP_0280at 338.001 kb on - strand, within PP_0280at 338.020 kb on - strand, within PP_0280at 338.056 kb on - strand, within PP_0280at 338.144 kb on + strand, within PP_0280at 338.144 kb on + strand, within PP_0280at 338.202 kb on + strand, within PP_0280at 338.202 kb on + strand, within PP_0280at 338.243 kb on + strand, within PP_0280at 338.243 kb on + strand, within PP_0280at 338.244 kb on - strand, within PP_0280at 338.244 kb on - strand, within PP_0280at 338.300 kb on + strand, within PP_0280at 338.351 kb on + strand, within PP_0280at 338.402 kb on + strand, within PP_0280at 338.402 kb on + strand, within PP_0280at 338.426 kb on + strand, within PP_0280at 338.569 kb on + strandat 338.570 kb on - strandat 338.570 kb on - strandat 338.570 kb on - strandat 338.619 kb on - strandat 338.650 kb on + strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.671 kb on + strand, within PP_0281at 338.671 kb on + strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.906 kb on + strand, within PP_0281at 339.046 kb on + strand, within PP_0281at 339.046 kb on + strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.058 kb on - strand, within PP_0281at 339.058 kb on - strand, within PP_0281at 339.097 kb on + strand, within PP_0281at 339.255 kb on - strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.338 kb on - strandat 339.338 kb on - strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.359 kb on - strandat 339.362 kb on + strandat 339.363 kb on - strandat 339.514 kb on + strand, within PP_0282at 339.514 kb on + strand, within PP_0282at 339.515 kb on - strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.548 kb on + strand, within PP_0282

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Per-strain Table

Position Strand Gene LocusTag Fraction 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.
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337,047 + PP_0279 0.42 -0.6
337,071 + PP_0279 0.44 -1.3
337,072 - PP_0279 0.44 +0.6
337,072 - PP_0279 0.44 +0.3
337,133 + PP_0279 0.49 +0.5
337,133 + PP_0279 0.49 +0.2
337,134 - PP_0279 0.49 -0.1
337,134 - PP_0279 0.49 -1.4
337,175 - PP_0279 0.52 -1.3
337,290 + PP_0279 0.62 -0.4
337,290 + PP_0279 0.62 -2.9
337,291 - PP_0279 0.62 +0.7
337,291 - PP_0279 0.62 +0.1
337,721 + -1.1
337,721 + -0.1
337,721 + -0.2
337,721 + +0.6
337,721 + -0.6
337,721 + +2.6
337,721 + -2.1
337,721 + +0.4
337,722 - -0.8
337,722 - -0.3
337,722 - -0.2
337,722 - -0.4
337,808 + -0.8
337,809 - +0.2
337,809 - -0.1
337,810 + +0.3
337,811 - -0.7
337,811 - -1.0
337,834 + +0.4
337,835 - -0.1
337,961 + PP_0280 0.12 +1.0
337,961 + PP_0280 0.12 +1.6
337,962 - PP_0280 0.12 -0.1
337,962 - PP_0280 0.12 +1.2
338,000 + PP_0280 0.18 +0.5
338,001 - PP_0280 0.18 +1.4
338,020 - PP_0280 0.20 +1.9
338,056 - PP_0280 0.26 -0.2
338,144 + PP_0280 0.38 +0.3
338,144 + PP_0280 0.38 +1.6
338,202 + PP_0280 0.47 -0.4
338,202 + PP_0280 0.47 +0.3
338,243 + PP_0280 0.53 +1.9
338,243 + PP_0280 0.53 +2.6
338,244 - PP_0280 0.53 +1.2
338,244 - PP_0280 0.53 -1.2
338,300 + PP_0280 0.61 +0.3
338,351 + PP_0280 0.68 -0.4
338,402 + PP_0280 0.76 -0.4
338,402 + PP_0280 0.76 +0.4
338,426 + PP_0280 0.79 +1.6
338,569 + +1.6
338,570 - +0.5
338,570 - -1.0
338,570 - -0.7
338,619 - -0.2
338,650 + PP_0281 0.12 +0.7
338,651 - PP_0281 0.12 -0.9
338,651 - PP_0281 0.12 +2.0
338,651 - PP_0281 0.12 +1.0
338,651 - PP_0281 0.12 +1.3
338,671 + PP_0281 0.15 -0.0
338,671 + PP_0281 0.15 -0.7
338,672 - PP_0281 0.15 -1.1
338,672 - PP_0281 0.15 -2.0
338,672 - PP_0281 0.15 +0.5
338,906 + PP_0281 0.49 -0.5
339,046 + PP_0281 0.69 -0.7
339,046 + PP_0281 0.69 -1.2
339,047 - PP_0281 0.69 +1.0
339,047 - PP_0281 0.69 +0.8
339,047 - PP_0281 0.69 +0.3
339,050 + PP_0281 0.70 -1.1
339,050 + PP_0281 0.70 +0.5
339,050 + PP_0281 0.70 -1.0
339,051 - PP_0281 0.70 -0.0
339,051 - PP_0281 0.70 -0.1
339,051 - PP_0281 0.70 +1.0
339,051 - PP_0281 0.70 -0.3
339,051 - PP_0281 0.70 +0.4
339,051 - PP_0281 0.70 -1.4
339,051 - PP_0281 0.70 -0.7
339,058 - PP_0281 0.71 +1.6
339,058 - PP_0281 0.71 +2.1
339,097 + PP_0281 0.76 -0.3
339,255 - +1.4
339,337 + +2.6
339,337 + -0.1
339,337 + +0.6
339,337 + -0.6
339,338 - +1.3
339,338 - -0.1
339,358 + +0.3
339,358 + +0.7
339,358 + -2.3
339,358 + +2.6
339,359 - +0.9
339,362 + -0.6
339,363 - -0.4
339,514 + PP_0282 0.26 +1.6
339,514 + PP_0282 0.26 -0.1
339,515 - PP_0282 0.27 +0.3
339,523 + PP_0282 0.28 +0.4
339,523 + PP_0282 0.28 +1.0
339,523 + PP_0282 0.28 +1.1
339,524 - PP_0282 0.28 +0.3
339,524 - PP_0282 0.28 +1.0
339,524 - PP_0282 0.28 +0.1
339,524 - PP_0282 0.28 +1.2
339,524 - PP_0282 0.28 -1.0
339,548 + PP_0282 0.31 +0.6

Or see this region's nucleotide sequence