Strain Fitness in Pseudomonas putida KT2440 around PP_4933

Experiment: Adaptation in M9 media timecourse 2; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 2; day 3
5,612,995	-				-0.1
5,612,995	-				-0.9
5,613,096	+				+1.1
5,613,097	-				-0.1
5,613,097	-				-0.3
5,613,097	-				-0.2
5,613,097	-				+0.0
5,613,097	-				+0.1
5,613,206	-		PP_4933	0.16	+1.2
5,613,351	+		PP_4933	0.31	-0.4
5,613,351	+		PP_4933	0.31	-0.5
5,613,351	+		PP_4933	0.31	-0.4
5,613,352	-		PP_4933	0.31	-0.3
5,613,571	-		PP_4933	0.54	-0.2
5,613,571	-		PP_4933	0.54	+2.2
5,613,590	+		PP_4933	0.56	-0.2
5,613,616	-		PP_4933	0.58	+0.5
5,613,626	+		PP_4933	0.59	+0.2
5,613,626	+		PP_4933	0.59	-0.5
5,613,626	+		PP_4933	0.59	-1.4
5,613,627	-		PP_4933	0.60	-0.3
5,613,627	-		PP_4933	0.60	-0.0
5,613,627	-		PP_4933	0.60	-2.5
5,613,627	-		PP_4933	0.60	-0.6
5,613,743	+		PP_4933	0.72	+0.4
5,613,786	-		PP_4933	0.76	+0.2
5,613,786	-		PP_4933	0.76	+1.2
5,613,786	-		PP_4933	0.76	+0.4
5,613,820	+		PP_4933	0.79	-2.0
5,613,834	-		PP_4933	0.81	-0.1
5,613,888	+		PP_4933	0.86	+1.2