Strain Fitness in Pseudomonas putida KT2440 around PP_4550

Experiment: Adaptation in M9 media timecourse 2; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 2; day 3
5,172,319	+		PP_4549	0.62	-1.9
5,172,424	+		PP_4549	0.68	-1.9
5,172,448	+		PP_4549	0.70	+0.2
5,172,448	+		PP_4549	0.70	-0.3
5,172,448	+		PP_4549	0.70	-0.5
5,172,449	-		PP_4549	0.70	-0.6
5,172,635	-		PP_4549	0.81	+1.0
5,172,752	+		PP_4549	0.88	-1.2
5,172,793	+				-0.9
5,172,793	+				+0.4
5,172,794	-				-0.5
5,172,794	-				+0.1
5,172,794	-				+1.1
5,172,806	-				+0.3
5,172,813	-				-1.2
5,172,813	-				+1.6
5,172,831	-				+0.5
5,172,873	+				+0.9
5,172,873	+				+0.9
5,172,873	+				+0.4
5,172,873	+				+0.3
5,172,874	-				+1.5
5,172,874	-				-2.2
5,172,931	+				+0.7
5,172,932	-				+1.6
5,172,932	-				+0.9
5,172,935	+				-0.3
5,172,935	+				-0.6
5,172,935	+				-0.9
5,172,936	-				+0.1
5,172,936	-				-0.5
5,172,936	-				+0.7
5,173,015	+				+1.3
5,173,016	-				-0.5
5,173,016	-				-0.4
5,173,021	+				-0.5
5,173,022	-				+0.9
5,173,022	-				+0.3
5,173,073	-				+0.1
5,173,183	+				+0.7
5,173,183	+				+0.3
5,173,184	-				+0.7
5,173,192	-				+1.1
5,173,192	-				-0.4
5,173,193	+				-0.9
5,173,193	+				-1.2
5,173,193	+				-0.2
5,173,193	+				-0.2
5,173,204	-				-0.7
5,173,240	+				+1.5
5,173,240	+				+1.3
5,173,240	+				-0.2
5,173,254	+				+0.3
5,173,255	-				-0.2
5,173,255	-				+0.7
5,173,297	+				+0.1
5,173,297	+				+0.4
5,173,298	-				-0.3
5,173,298	-				+0.2
5,173,298	-				+0.1
5,173,298	-				+0.1
5,173,299	+				-0.1
5,173,300	-				-0.2
5,173,375	+				+0.5
5,173,375	+				-0.3
5,173,375	+				-0.6
5,173,376	-				-1.0
5,173,382	+				-0.4
5,173,407	-				-0.0
5,173,407	-				-0.4
5,173,556	+		PP_4550	0.16	+0.9
5,173,557	-		PP_4550	0.16	+0.4
5,173,852	-		PP_4550	0.33	+0.4
5,174,035	-		PP_4550	0.44	+0.1
5,174,035	-		PP_4550	0.44	-0.5
5,174,035	-		PP_4550	0.44	-0.1
5,174,094	+		PP_4550	0.48	+0.1
5,174,109	+		PP_4550	0.48	-0.1
5,174,121	+		PP_4550	0.49	-0.8
5,174,121	+		PP_4550	0.49	-0.1
5,174,121	+		PP_4550	0.49	-1.0
5,174,121	+		PP_4550	0.49	-0.1
5,174,121	+		PP_4550	0.49	+0.7
5,174,121	+		PP_4550	0.49	-0.6
5,174,122	-		PP_4550	0.49	-0.0
5,174,122	-		PP_4550	0.49	+0.4
5,174,168	+		PP_4550	0.52	+0.7
5,174,168	+		PP_4550	0.52	-0.0
5,174,168	+		PP_4550	0.52	-0.7
5,174,169	-		PP_4550	0.52	-0.3
5,174,169	-		PP_4550	0.52	-0.1
5,174,169	-		PP_4550	0.52	-0.3
5,174,169	-		PP_4550	0.52	-0.2
5,174,169	-		PP_4550	0.52	-1.3
5,174,169	-		PP_4550	0.52	+0.1
5,174,169	-		PP_4550	0.52	-0.4
5,174,169	-		PP_4550	0.52	-0.3
5,174,177	+		PP_4550	0.52	+0.5
5,174,444	+		PP_4550	0.68	+0.6
5,174,598	-		PP_4550	0.77	-0.6
5,174,825	+				+1.1
5,174,825	+				+0.3
5,174,826	-				+0.0
5,174,912	+				-1.2
5,174,913	-				+0.1
5,174,920	+				+0.1
5,174,981	+				+1.6
5,174,982	-				+1.7
5,174,982	-				-0.0
5,174,984	+				+0.3
5,174,984	+				-0.5
5,174,984	+				+0.4
5,174,984	+				-0.4
5,174,985	-				-0.6
5,175,019	+				+0.1
5,175,019	+				+0.1
5,175,020	-				+0.4
5,175,020	-				-0.4
5,175,020	-				-0.4
5,175,027	+				-0.4
5,175,028	-				+0.7
5,175,028	-				+0.6
5,175,068	-				-0.5
5,175,074	+				-1.7
5,175,090	+				+0.7
5,175,090	+				-0.4
5,175,090	+				-1.5
5,175,090	+				+0.0
5,175,090	+				+1.1
5,175,091	-				+0.7
5,175,091	-				+0.7
5,175,091	-				+0.2
5,175,091	-				+0.1
5,175,092	+				+1.1
5,175,092	+				-0.6
5,175,092	+				-0.0
5,175,092	+				-1.2
5,175,093	-				-0.4
5,175,093	-				+1.7
5,175,093	-				-0.8
5,175,093	-				-0.5
5,175,125	+				+2.7
5,175,126	-				+0.2
5,175,126	-				+1.1
5,175,126	-				-0.3
5,175,161	+				+0.5
5,175,161	+				+0.1
5,175,161	+				+2.7
5,175,162	-				-0.4
5,175,162	-				-0.7
5,175,162	-				+2.0
5,175,162	-				+0.3
5,175,246	+				+2.3
5,175,250	+				-1.0
5,175,250	+				+0.5
5,175,250	+				+0.1
5,175,250	+				-0.1
5,175,250	+				-0.5
5,175,250	+				-0.7
5,175,251	-				-0.8
5,175,251	-				-1.4
5,175,251	-				+0.4
5,175,251	-				-1.1
5,175,251	-				-1.6
5,175,277	+				-0.7
5,175,277	+				-0.0
5,175,277	+				-0.0
5,175,547	-		PP_4551	0.37	+0.4
5,175,547	-		PP_4551	0.37	-0.3
5,175,547	-		PP_4551	0.37	+0.1
5,175,561	+		PP_4551	0.38	-1.1
5,175,561	+		PP_4551	0.38	+0.8
5,175,616	-		PP_4551	0.44	+1.1
5,175,616	-		PP_4551	0.44	-0.6
5,175,616	-		PP_4551	0.44	-0.1
5,175,798	+		PP_4551	0.63	+0.3