Strain Fitness in Pseudomonas putida KT2440 around PP_4059

Experiment: Adaptation in M9 media timecourse 2; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 2; day 3
4,579,177	-		PP_4058	0.58	+0.2
4,579,231	+		PP_4058	0.60	-1.8
4,579,251	+		PP_4058	0.61	-1.7
4,579,251	+		PP_4058	0.61	-1.7
4,579,251	+		PP_4058	0.61	-2.4
4,579,251	+		PP_4058	0.61	+1.2
4,579,252	-		PP_4058	0.61	-0.3
4,579,287	+		PP_4058	0.63	-2.4
4,579,371	+		PP_4058	0.67	+1.2
4,579,372	-		PP_4058	0.67	+0.2
4,579,372	-		PP_4058	0.67	-3.2
4,579,440	-		PP_4058	0.70	-3.8
4,579,440	-		PP_4058	0.70	+1.2
4,579,505	+				-1.4
4,579,505	+		PP_4058	0.73	+1.2
4,579,506	-		PP_4058	0.73	-1.2
4,579,506	-		PP_4058	0.73	-0.4
4,579,536	+		PP_4058	0.74	-3.5
4,579,537	-		PP_4058	0.74	-1.8
4,579,537	-		PP_4058	0.74	+0.2
4,579,803	+		PP_4058	0.86	-2.2
4,579,803	+		PP_4058	0.86	-2.0
4,579,804	-		PP_4058	0.86	-2.9
4,580,101	+				-2.2
4,580,102	-				-3.3
4,580,102	-				-3.4
4,580,127	+				+0.9
4,580,192	+				+0.3
4,580,192	+				-1.6
4,580,192	+				-4.0
4,580,192	+				-3.2
4,580,192	+				-2.2
4,580,193	-				-0.7
4,580,193	-				-0.5
4,580,193	-				-1.2
4,580,193	-				-1.1
4,580,196	+				-1.3
4,580,196	+				+0.2
4,580,197	-				+0.4
4,580,197	-				-0.1
4,580,197	-				-1.5
4,580,205	-				-0.2
4,580,205	-				-1.5
4,580,297	+				-1.4
4,580,298	-				+0.3
4,580,333	+				-2.9
4,580,334	-				-1.7
4,580,420	+				+2.1
4,580,421	-				-1.7
4,580,456	+		PP_4059	0.11	-0.5
4,580,456	+		PP_4059	0.11	-0.6
4,580,457	-		PP_4059	0.11	-1.4
4,580,522	+		PP_4059	0.12	-1.2
4,580,522	+		PP_4059	0.12	+0.7
4,580,522	+		PP_4059	0.12	-1.0
4,580,522	+		PP_4059	0.12	-0.8
4,580,523	-		PP_4059	0.13	-1.6
4,580,523	-		PP_4059	0.13	-2.6
4,580,523	-		PP_4059	0.13	-1.1
4,580,572	+		PP_4059	0.14	-1.0
4,580,991	-		PP_4059	0.27	-0.4
4,581,093	-		PP_4059	0.30	-1.3
4,581,464	+		PP_4059	0.41	-0.9
4,581,545	+		PP_4059	0.43	-1.6
4,581,546	-		PP_4059	0.43	-0.7
4,581,608	+		PP_4059	0.45	-1.5
4,581,636	+		PP_4059	0.46	-1.1
4,581,683	-		PP_4059	0.47	-1.1
4,581,776	+		PP_4059	0.50	-0.8
4,581,776	+		PP_4059	0.50	-0.2
4,581,776	+		PP_4059	0.50	-1.4
4,581,776	+		PP_4059	0.50	-0.2
4,581,776	+		PP_4059	0.50	+0.6
4,581,777	-				+2.1
4,581,777	-		PP_4059	0.50	+0.7
4,581,811	+		PP_4059	0.51	+0.2
4,581,812	-		PP_4059	0.51	-0.1
4,581,863	+		PP_4059	0.53	-1.6
4,581,864	-		PP_4059	0.53	-0.2
4,581,951	+		PP_4059	0.56	-0.7
4,581,953	+		PP_4059	0.56	-2.3
4,581,965	+		PP_4059	0.56	-0.6
4,581,965	+		PP_4059	0.56	-0.9
4,581,966	-		PP_4059	0.56	-0.1
4,581,966	-		PP_4059	0.56	-1.4
4,581,966	-		PP_4059	0.56	-2.3
4,581,966	-		PP_4059	0.56	-0.7
4,582,000	-		PP_4059	0.57	-0.1
4,582,121	+		PP_4059	0.61	-0.3
4,582,121	+		PP_4059	0.61	+1.1
4,582,121	+		PP_4059	0.61	-0.7
4,582,238	+		PP_4059	0.64	-1.2
4,582,238	+		PP_4059	0.64	-0.9
4,582,238	+		PP_4059	0.64	-2.8
4,582,239	-		PP_4059	0.64	-0.8
4,582,239	-		PP_4059	0.64	+0.2
4,582,242	+		PP_4059	0.64	-1.0
4,582,242	+		PP_4059	0.64	-1.1
4,582,242	+		PP_4059	0.64	+0.4
4,582,242	+		PP_4059	0.64	-0.0
4,582,242	+		PP_4059	0.64	-0.4
4,582,242	+		PP_4059	0.64	-0.8
4,582,243	-		PP_4059	0.64	+0.6
4,582,243	-		PP_4059	0.64	-0.7
4,582,243	-		PP_4059	0.64	-0.5
4,582,243	-		PP_4059	0.64	-2.0
4,582,243	-		PP_4059	0.64	+1.4
4,582,243	-		PP_4059	0.64	-2.4
4,582,258	+		PP_4059	0.65	-1.7
4,582,258	+		PP_4059	0.65	+0.1
4,582,259	-		PP_4059	0.65	-0.8
4,582,259	-		PP_4059	0.65	+0.7
4,582,259	-		PP_4059	0.65	-0.4
4,582,271	+		PP_4059	0.65	-1.4
4,582,272	-		PP_4059	0.65	-1.0
4,582,324	+		PP_4059	0.67	+0.1
4,582,324	+		PP_4059	0.67	-1.9
4,582,325	-		PP_4059	0.67	-0.1
4,582,325	-		PP_4059	0.67	+0.8
4,582,406	+		PP_4059	0.69	-1.1
4,582,406	+		PP_4059	0.69	-0.9
4,582,407	-		PP_4059	0.69	+0.5
4,582,407	-		PP_4059	0.69	+0.4
4,582,409	+		PP_4059	0.69	-0.0
4,582,410	-		PP_4059	0.69	+0.1
4,582,568	+		PP_4059	0.74	-0.9
4,582,568	+		PP_4059	0.74	-0.7
4,582,568	+		PP_4059	0.74	-1.4
4,582,569	-		PP_4059	0.74	+0.1
4,582,569	-		PP_4059	0.74	-0.3
4,582,569	-		PP_4059	0.74	-1.0
4,582,569	-		PP_4059	0.74	-1.3
4,582,635	-		PP_4059	0.76	+0.1
4,582,691	+				-0.4
4,582,692	-		PP_4059	0.78	-1.0
4,582,692	-		PP_4059	0.78	-0.5
4,582,781	+		PP_4059	0.81	+0.7
4,582,781	+		PP_4059	0.81	-0.7
4,582,781	+		PP_4059	0.81	-1.5
4,582,810	+		PP_4059	0.81	-0.3
4,582,810	+		PP_4059	0.81	-2.2
4,582,810	+		PP_4059	0.81	-1.4
4,582,811	-		PP_4059	0.81	+0.3
4,582,811	-		PP_4059	0.81	+1.4
4,582,898	+		PP_4059	0.84	+0.1
4,582,917	-		PP_4059	0.85	+0.1
4,582,988	+		PP_4059	0.87	-0.0
4,583,015	+		PP_4059	0.88	-0.9
4,583,015	+		PP_4059	0.88	-1.5
4,583,015	+		PP_4059	0.88	+0.6
4,583,016	-		PP_4059	0.88	+0.3
4,583,016	-		PP_4059	0.88	-0.9
4,583,016	-		PP_4059	0.88	-0.1
4,583,192	+				-1.4
4,583,192	+				-1.1
4,583,235	-				-0.7
4,583,278	-				-0.7
4,583,279	+				-2.3
4,583,379	-				+0.1
4,583,482	-				-0.8
4,583,493	+				-1.2
4,583,556	+				-0.8
4,583,556	+				+0.4
4,583,568	+				-1.1
4,583,568	+				+0.6
4,583,569	-				+0.3
4,583,599	+				-0.0
4,583,650	-				-2.2
4,583,650	-				-2.6
4,583,650	-				-1.1
4,583,812	+		PP_4060	0.11	-1.8
4,583,813	-		PP_4060	0.11	-1.4
4,583,813	-		PP_4060	0.11	+1.1
4,583,813	-		PP_4060	0.11	-3.4
4,583,831	+		PP_4060	0.12	-3.0
4,583,832	-		PP_4060	0.12	-0.6
4,583,845	+		PP_4060	0.12	-1.4
4,583,845	+		PP_4060	0.12	-1.6
4,583,922	-		PP_4060	0.16	-0.7
4,583,922	-		PP_4060	0.16	-1.0
4,583,990	-		PP_4060	0.20	-0.5
4,583,990	-		PP_4060	0.20	+2.1
4,584,007	+		PP_4060	0.21	-2.5
4,584,008	-		PP_4060	0.21	-0.5
4,584,058	+		PP_4060	0.23	-1.7
4,584,058	+		PP_4060	0.23	-1.7
4,584,058	+		PP_4060	0.23	+0.1
4,584,058	+				+0.1
4,584,059	-		PP_4060	0.23	-0.9
4,584,059	-		PP_4060	0.23	-1.4
4,584,059	-		PP_4060	0.23	-2.6
4,584,059	-		PP_4060	0.23	-1.2
4,584,059	-		PP_4060	0.23	-1.5
4,584,059	-		PP_4060	0.23	+1.7
4,584,158	+		PP_4060	0.28	-1.6
4,584,158	+		PP_4060	0.28	-1.5
4,584,159	-		PP_4060	0.28	-0.9
4,584,259	+		PP_4060	0.33	-1.9
4,584,259	+		PP_4060	0.33	-1.7
4,584,259	+		PP_4060	0.33	-1.8
4,584,260	-		PP_4060	0.33	-1.0
4,584,263	+		PP_4060	0.33	-1.7
4,584,263	+				-0.1
4,584,263	+		PP_4060	0.33	-1.2
4,584,263	+		PP_4060	0.33	-1.3
4,584,264	-		PP_4060	0.34	+0.1
4,584,264	-		PP_4060	0.34	-1.9
4,584,265	+		PP_4060	0.34	+0.5
4,584,265	+		PP_4060	0.34	-1.1
4,584,265	+		PP_4060	0.34	-0.4
4,584,265	+		PP_4060	0.34	-1.2
4,584,265	+		PP_4060	0.34	-0.4
4,584,265	+		PP_4060	0.34	-2.4
4,584,265	+		PP_4060	0.34	-0.1
4,584,265	+		PP_4060	0.34	-2.9
4,584,266	-		PP_4060	0.34	-1.3
4,584,266	-		PP_4060	0.34	-1.9
4,584,266	-		PP_4060	0.34	+0.4
4,584,266	-		PP_4060	0.34	-2.0
4,584,266	-		PP_4060	0.34	-2.8
4,584,266	-		PP_4060	0.34	-0.4
4,584,318	-		PP_4060	0.36	-1.7