Strain Fitness in Pseudomonas putida KT2440 around PP_3685

Experiment: Adaptation in M9 media timecourse 2; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 2; day 3
4,188,812	-				-0.2
4,188,846	+		PP_5611	0.13	+0.1
4,188,876	+		PP_5611	0.17	-0.6
4,188,927	+		PP_5611	0.23	-0.2
4,188,928	-		PP_5611	0.23	-0.4
4,188,928	-		PP_5611	0.23	-1.3
4,189,006	-		PP_5611	0.33	-0.6
4,189,006	-		PP_5611	0.33	-1.3
4,189,084	+		PP_5611	0.42	+0.2
4,189,101	+		PP_5611	0.44	+0.5
4,189,122	+		PP_5611	0.47	+0.5
4,189,122	+		PP_5611	0.47	-1.8
4,189,122	+		PP_5611	0.47	-0.0
4,189,123	-				-1.9
4,189,123	-		PP_5611	0.47	-0.6
4,189,123	-		PP_5611	0.47	+0.5
4,189,123	-		PP_5611	0.47	+0.0
4,189,123	-		PP_5611	0.47	+0.0
4,189,124	+		PP_5611	0.47	+0.1
4,189,125	-		PP_5611	0.47	-1.5
4,189,163	+		PP_5611	0.52	+1.0
4,189,164	-		PP_5611	0.52	-0.6
4,189,220	+		PP_5611	0.59	-0.3
4,189,242	+		PP_5611	0.62	-0.0
4,189,242	+		PP_5611	0.62	-0.1
4,189,243	-		PP_5611	0.62	-1.4
4,189,243	-		PP_5611	0.62	+1.6
4,189,243	-		PP_5611	0.62	-0.4
4,189,341	-		PP_5611	0.74	+0.3
4,189,392	+		PP_5611	0.80	+1.9
4,189,392	+		PP_5611	0.80	-0.1
4,189,393	-		PP_5611	0.80	-1.0
4,189,393	-		PP_5611	0.80	-0.9
4,189,393	-		PP_5611	0.80	+0.3
4,189,393	-		PP_5611	0.80	-0.1
4,189,468	+		PP_5611	0.89	-0.3
4,189,468	+		PP_5611	0.89	+0.3
4,189,469	-		PP_5611	0.89	+0.3
4,189,544	-				-0.2
4,189,558	+				-0.9
4,189,558	+				+0.7
4,189,558	+				-0.1
4,189,558	+				+0.5
4,189,558	+				-0.4
4,189,559	-				-0.1
4,189,559	-				+1.0
4,189,565	+				-0.1
4,189,565	+				-0.9
4,189,601	+				-1.8
4,189,616	-				-2.0
4,189,737	+				-0.1
4,189,762	+				-0.7
4,189,762	+				+0.5
4,189,762	+				+1.7
4,189,763	-				-0.2
4,189,793	+		PP_3685	0.16	+1.1
4,189,793	+		PP_3685	0.16	-1.1
4,189,808	+		PP_3685	0.24	-0.9
4,189,844	-		PP_3685	0.44	-1.4
4,189,844	-		PP_3685	0.44	+0.7
4,189,844	-		PP_3685	0.44	+0.2
4,189,844	-		PP_3685	0.44	-1.4
4,189,864	+		PP_3685	0.55	+1.0
4,189,871	-		PP_3685	0.58	+0.4
4,189,871	-		PP_3685	0.58	-1.2
4,189,944	+				+0.3
4,189,944	+				+0.3
4,189,944	+				-0.2
4,189,944	+				-0.2
4,189,944	+				+0.1
4,189,944	+				+0.2
4,189,959	-				+0.7
4,189,959	-				-0.3
4,190,145	+		PP_5612	0.14	-1.4
4,190,145	+		PP_5612	0.14	-0.1
4,190,146	-		PP_5612	0.15	-0.6
4,190,146	-		PP_5612	0.15	-0.2
4,190,308	-		PP_5612	0.41	-0.0
4,190,311	+		PP_5612	0.42	+0.8
4,190,312	-		PP_5612	0.42	+0.1
4,190,349	-		PP_5612	0.48	-0.7
4,190,403	-		PP_5612	0.57	-2.4
4,190,457	+		PP_5612	0.65	+1.7
4,190,500	-		PP_5612	0.72	+0.0
4,190,545	-		PP_5612	0.80	-0.4
4,190,691	+				-0.0
4,190,736	+				+0.5
4,190,737	-				+0.1
4,190,737	-				+1.1
4,190,737	-				-0.4
4,190,820	+				-0.0
4,190,821	-				-0.9
4,190,826	+				-1.0
4,190,826	+				-0.3
4,190,827	-				+0.3
4,190,827	-				+0.2
4,190,942	+				+2.7