Strain Fitness in Pseudomonas putida KT2440 around PP_3583

Experiment: Adaptation in M9 media timecourse 2; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 2; day 3
4,064,965	+		PP_3582	0.33	-0.6
4,064,966	-		PP_3582	0.33	+0.5
4,064,966	-		PP_3582	0.33	-0.3
4,064,966	-		PP_3582	0.33	-1.0
4,065,218	+		PP_3582	0.50	+2.1
4,065,295	+		PP_3582	0.55	+0.4
4,065,295	+		PP_3582	0.55	+1.1
4,065,355	+		PP_3582	0.59	+0.4
4,065,355	+		PP_3582	0.59	-1.0
4,065,356	-		PP_3582	0.59	+0.3
4,065,356	-		PP_3582	0.59	+0.3
4,065,356	-		PP_3582	0.59	-0.3
4,065,502	+		PP_3582	0.69	-0.4
4,065,502	+		PP_3582	0.69	+0.3
4,065,502	+		PP_3582	0.69	+0.0
4,065,527	+		PP_3582	0.71	-0.3
4,065,527	+		PP_3582	0.71	-1.5
4,066,032	+				+0.6
4,066,033	-				-0.6
4,066,038	+				-0.3
4,066,039	-				+0.0
4,066,054	+				-0.2
4,066,055	-				+0.5
4,066,055	-				-0.1
4,066,055	-				-0.5
4,066,056	+				+1.1
4,066,056	+				+0.4
4,066,057	-				-0.6
4,066,365	+		PP_3583	0.13	+0.0
4,066,410	-		PP_3583	0.15	-0.5
4,066,410	-		PP_3583	0.15	-0.5
4,066,410	-		PP_3583	0.15	-1.3
4,066,431	+		PP_3583	0.15	+0.3
4,066,431	+		PP_3583	0.15	-0.3
4,066,432	-		PP_3583	0.15	+0.1
4,066,441	-		PP_3583	0.16	-0.1
4,066,461	+		PP_3583	0.16	-0.0
4,066,461	+		PP_3583	0.16	+0.0
4,066,461	+		PP_3583	0.16	+1.3
4,066,462	-		PP_3583	0.16	-0.9
4,066,617	+		PP_3583	0.21	-0.6
4,066,617	+		PP_3583	0.21	+0.3
4,066,618	-		PP_3583	0.21	-0.6
4,066,701	+		PP_3583	0.24	+0.1
4,066,785	+		PP_3583	0.27	+0.1
4,066,786	-		PP_3583	0.27	+0.3
4,066,833	+		PP_3583	0.28	+0.3
4,066,833	+		PP_3583	0.28	-0.7
4,066,833	+		PP_3583	0.28	-1.6
4,066,833	+		PP_3583	0.28	-1.1
4,066,833	+		PP_3583	0.28	+0.2
4,066,833	+		PP_3583	0.28	-0.3
4,066,833	+		PP_3583	0.28	+0.4
4,066,834	-		PP_3583	0.28	-0.5
4,066,834	-		PP_3583	0.28	+0.6
4,066,874	+		PP_3583	0.30	-0.2
4,067,062	+		PP_3583	0.36	-0.1
4,067,064	+		PP_3583	0.36	+0.8
4,067,064	+		PP_3583	0.36	+0.1
4,067,064	+		PP_3583	0.36	+0.4
4,067,064	+		PP_3583	0.36	+0.5
4,067,064	+		PP_3583	0.36	+1.4
4,067,065	-		PP_3583	0.36	-0.2
4,067,065	-		PP_3583	0.36	-0.3
4,067,070	+		PP_3583	0.36	+0.1
4,067,433	+		PP_3583	0.48	-1.0
4,067,433	+		PP_3583	0.48	+0.0
4,067,434	-		PP_3583	0.48	-0.8
4,067,434	-		PP_3583	0.48	-0.2
4,067,520	+		PP_3583	0.50	-0.7
4,067,520	+		PP_3583	0.50	-0.0
4,067,520	+		PP_3583	0.50	-0.3
4,067,521	-		PP_3583	0.50	+0.9
4,067,620	+		PP_3583	0.54	-1.0
4,067,620	+		PP_3583	0.54	-0.0
4,067,620	+		PP_3583	0.54	+0.1
4,067,621	-		PP_3583	0.54	+0.1
4,067,621	-		PP_3583	0.54	+1.3
4,067,825	-		PP_3583	0.60	-0.0
4,067,931	+		PP_3583	0.64	+1.0
4,067,931	+		PP_3583	0.64	+0.0
4,067,932	-		PP_3583	0.64	-0.0
4,067,932	-		PP_3583	0.64	-0.7
4,067,932	-		PP_3583	0.64	-0.4
4,068,015	+		PP_3583	0.66	+0.6
4,068,015	+		PP_3583	0.66	+0.7
4,068,016	-		PP_3583	0.66	-0.9
4,068,256	-		PP_3583	0.74	+0.3
4,068,342	+		PP_3583	0.77	-2.3
4,068,441	-		PP_3583	0.80	+0.4
4,068,600	+		PP_3583	0.85	+0.6
4,068,600	+		PP_3583	0.85	-1.2
4,068,600	+		PP_3583	0.85	-0.5
4,068,601	-		PP_3583	0.85	+0.5
4,068,601	-		PP_3583	0.85	+0.9
4,068,679	-		PP_3583	0.88	-0.6
4,068,679	-		PP_3583	0.88	+0.4
4,068,679	-		PP_3583	0.88	+1.7
4,068,791	+				-0.2
4,068,792	-				-0.0
4,069,121	+				+0.4
4,069,121	+				+1.1
4,069,127	+				-1.1
4,069,127	+				+1.1
4,069,128	-				+0.3
4,069,310	+				-0.2
4,069,310	+				-1.5
4,069,311	-				+0.3
4,069,521	-		PP_3584	0.15	+0.3
4,069,521	-		PP_3584	0.15	+0.2
4,069,550	+		PP_3584	0.16	-0.7
4,069,550	+		PP_3584	0.16	+0.3
4,069,551	-		PP_3584	0.16	+0.9
4,069,551	-		PP_3584	0.16	-0.1
4,069,588	-		PP_3584	0.17	+0.1
4,069,922	+		PP_3584	0.28	+0.3
4,069,922	+		PP_3584	0.28	-0.3
4,069,923	-		PP_3584	0.28	+0.6
4,069,959	-		PP_3584	0.29	-0.4
4,070,027	+		PP_3584	0.31	+0.3