Strain Fitness in Pseudomonas putida KT2440 around PP_2664

Experiment: Adaptation in M9 media timecourse 2; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 2; day 3
3,050,543	+		PP_2663	0.32	+0.1
3,050,706	+		PP_2663	0.46	-0.6
3,050,706	+		PP_2663	0.46	+0.6
3,050,707	-		PP_2663	0.46	-0.5
3,050,707	-		PP_2663	0.46	+0.3
3,050,707	-		PP_2663	0.46	+1.5
3,050,710	-		PP_2663	0.46	-1.5
3,050,710	-		PP_2663	0.46	+1.0
3,050,886	+		PP_2663	0.62	-0.4
3,050,973	+		PP_2663	0.69	-0.5
3,050,973	+		PP_2663	0.69	+0.6
3,050,974	-		PP_2663	0.69	+0.2
3,050,974	-		PP_2663	0.69	+0.4
3,050,976	+		PP_2663	0.69	+0.2
3,050,976	+		PP_2663	0.69	+0.2
3,050,976	+		PP_2663	0.69	-0.1
3,050,977	-		PP_2663	0.69	-0.1
3,050,977	-		PP_2663	0.69	+0.6
3,051,024	+		PP_2663	0.73	+0.6
3,051,384	+				+0.6
3,051,385	-				+0.1
3,051,443	-				-0.4
3,051,482	+				+1.8
3,051,649	+		PP_2664	0.18	-0.0
3,051,682	+				+1.5
3,051,683	-		PP_2664	0.20	-0.2
3,051,683	-		PP_2664	0.20	-0.5
3,051,683	-		PP_2664	0.20	-0.3
3,051,683	-		PP_2664	0.20	-0.1
3,051,745	+		PP_2664	0.23	+0.6
3,051,763	+		PP_2664	0.24	+0.1
3,051,764	-		PP_2664	0.24	-0.1
3,051,764	-		PP_2664	0.24	+0.3
3,051,819	+		PP_2664	0.27	-0.3
3,051,820	-		PP_2664	0.27	-1.2
3,051,839	-		PP_2664	0.28	-0.9
3,051,839	-		PP_2664	0.28	-0.4
3,051,853	+		PP_2664	0.29	-0.1
3,051,892	-		PP_2664	0.31	-0.9
3,051,956	-		PP_2664	0.34	+0.0
3,052,276	-		PP_2664	0.51	+0.3
3,052,360	+		PP_2664	0.56	-0.5
3,052,360	+		PP_2664	0.56	+0.2
3,052,361	-		PP_2664	0.56	-0.2
3,052,476	+		PP_2664	0.62	+0.3
3,052,483	+				+0.2
3,052,548	-		PP_2664	0.66	-0.5
3,052,951	+		PP_2664	0.87	+0.2
3,052,952	-		PP_2664	0.87	-0.3
3,052,952	-		PP_2664	0.87	-0.8
3,052,985	-		PP_2664	0.89	-0.3
3,053,142	-				-0.4
3,053,197	+				+0.3
3,053,259	-				+0.8
3,053,300	-				+0.1
3,053,300	-				-0.5
3,053,379	-		PP_2665	0.20	-0.0
3,053,484	+		PP_2665	0.36	-0.8
3,053,499	+		PP_2665	0.38	+0.2
3,053,538	-		PP_2665	0.44	-0.2
3,053,622	-		PP_2665	0.57	-0.3
3,053,622	-		PP_2665	0.57	-0.4
3,053,626	-		PP_2665	0.57	+0.4
3,053,626	-		PP_2665	0.57	+0.1
3,053,906	+				+0.4
3,053,953	+				+2.2
3,053,953	+				+0.4
3,053,954	-				+0.3
3,054,039	-		PP_2666	0.13	+0.5
3,054,054	+		PP_2666	0.16	+0.1
3,054,055	-		PP_2666	0.16	+0.1
3,054,055	-		PP_2666	0.16	-1.1
3,054,095	-		PP_2666	0.23	-0.5
3,054,165	+		PP_2666	0.36	+0.1
3,054,166	-		PP_2666	0.36	+2.2
3,054,176	+				-0.8
3,054,176	+		PP_2666	0.38	-0.4
3,054,177	-		PP_2666	0.38	-0.4
3,054,177	-		PP_2666	0.38	+0.4