Strain Fitness in Pseudomonas putida KT2440 around PP_1617

Experiment: Adaptation in M9 media timecourse 2; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 2; day 3
1,812,660	+		PP_1616	0.12	-0.4
1,812,661	-		PP_1616	0.12	-0.9
1,812,661	-		PP_1616	0.12	-0.8
1,812,661	-		PP_1616	0.12	-2.2
1,812,662	+		PP_1616	0.13	-0.8
1,812,662	+		PP_1616	0.13	+0.4
1,812,662	+		PP_1616	0.13	-0.5
1,812,663	-		PP_1616	0.13	+2.2
1,812,690	-		PP_1616	0.15	-0.7
1,812,690	-		PP_1616	0.15	-0.3
1,812,690	-		PP_1616	0.15	+0.7
1,812,790	-		PP_1616	0.24	-0.8
1,812,790	-		PP_1616	0.24	+0.0
1,812,906	+		PP_1616	0.34	-0.5
1,812,930	+		PP_1616	0.37	-1.5
1,812,930	+		PP_1616	0.37	-0.1
1,812,930	+		PP_1616	0.37	+0.4
1,812,931	-		PP_1616	0.37	-1.2
1,812,931	-		PP_1616	0.37	+0.4
1,812,957	+		PP_1616	0.39	+0.2
1,813,091	+		PP_1616	0.51	-0.7
1,813,091	+		PP_1616	0.51	-0.2
1,813,092	-		PP_1616	0.51	+0.2
1,813,166	+		PP_1616	0.58	-1.8
1,813,248	+		PP_1616	0.65	+1.2
1,813,248	+		PP_1616	0.65	+0.6
1,813,249	-		PP_1616	0.65	-0.0
1,813,249	-		PP_1616	0.65	-0.2
1,813,504	-		PP_1616	0.88	-0.2
1,813,504	-		PP_1616	0.88	+0.0
1,813,504	-		PP_1616	0.88	-1.3
1,813,619	+				+0.3
1,813,657	+				-0.3
1,813,733	-		PP_1617	0.10	-0.9
1,813,749	-		PP_1617	0.12	-0.7
1,813,793	+		PP_1617	0.17	+0.7
1,813,794	-		PP_1617	0.17	+0.2
1,813,968	-		PP_1617	0.38	-0.2
1,813,968	-		PP_1617	0.38	-0.8
1,813,968	-		PP_1617	0.38	+1.9
1,814,018	+		PP_1617	0.44	-0.9
1,814,018	+		PP_1617	0.44	-0.7
1,814,019	-		PP_1617	0.44	-0.4
1,814,019	-		PP_1617	0.44	+0.8
1,814,144	+		PP_1617	0.58	+0.2
1,814,407	+		PP_1617	0.89	+0.6
1,814,407	+		PP_1617	0.89	+0.3
1,814,408	-		PP_1617	0.89	-0.9
1,814,428	+				-1.8
1,814,428	+				-0.3
1,814,428	+				-1.4
1,814,428	+				-0.0
1,814,428	+				+0.2
1,814,428	+				-0.2
1,814,428	+				-0.8
1,814,428	+				-0.4
1,814,428	+				+2.7
1,814,428	+				+0.2
1,814,429	-				-0.3
1,814,429	-				+1.6
1,814,429	-				-0.6
1,814,429	-				-0.0
1,814,429	-				+0.0
1,814,429	-				+0.4
1,814,429	-				-1.1
1,814,429	-				+0.3
1,814,432	+				+0.7
1,814,432	+				+1.2
1,814,432	+				+0.3
1,814,432	+				-0.8
1,814,432	+				-0.7
1,814,432	+				-0.3
1,814,432	+				-0.7
1,814,433	-				+0.2
1,814,433	-				-0.0
1,814,435	+				+0.2
1,814,436	-				-0.3
1,814,436	-				+0.4
1,814,436	-				-0.3
1,814,498	+				-0.7
1,815,187	+				-0.6
1,815,187	+				-0.1
1,815,188	-				-0.7
1,815,188	-				-2.2
1,815,189	+		PP_1619	0.10	-0.1
1,815,189	+		PP_1619	0.10	+0.5
1,815,189	+		PP_1619	0.10	+0.7
1,815,190	-		PP_1619	0.10	-0.3
1,815,190	-		PP_1619	0.10	-1.3
1,815,190	-		PP_1619	0.10	+1.0
1,815,309	-		PP_1619	0.21	+0.0