Strain Fitness in Pseudomonas putida KT2440 around PP_1170

Experiment: Adaptation in M9 media timecourse 2; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 2; day 3
1,344,183	+				-0.4
1,344,405	-		PP_1169	0.27	+0.3
1,344,405	-		PP_1169	0.27	+0.4
1,344,441	+		PP_1169	0.30	+0.5
1,344,441	+		PP_1169	0.30	+0.2
1,344,441	+		PP_1169	0.30	-0.1
1,344,442	-		PP_1169	0.30	-0.2
1,344,442	-		PP_1169	0.30	-0.9
1,344,442	-		PP_1169	0.30	-1.1
1,344,442	-		PP_1169	0.30	-1.0
1,344,444	+		PP_1169	0.31	+0.7
1,344,445	-		PP_1169	0.31	-1.2
1,344,445	-		PP_1169	0.31	+0.5
1,344,609	-		PP_1169	0.48	+0.8
1,344,609	-		PP_1169	0.48	+0.3
1,344,663	+		PP_1169	0.53	-0.4
1,344,663	+		PP_1169	0.53	+0.6
1,344,664	-		PP_1169	0.53	-0.3
1,344,664	-		PP_1169	0.53	+0.1
1,344,812	+		PP_1169	0.69	-0.5
1,344,813	-		PP_1169	0.69	+0.9
1,345,085	+				+0.3
1,345,140	+				-0.4
1,345,192	+				+0.2
1,345,297	+		PP_1170	0.13	-0.6
1,345,298	-		PP_1170	0.13	-0.4
1,345,298	-		PP_1170	0.13	+0.5
1,345,430	-		PP_1170	0.28	+0.1
1,345,475	-		PP_1170	0.33	+0.8
1,345,531	+		PP_1170	0.40	-0.2
1,345,579	+		PP_1170	0.45	-0.8
1,345,579	+		PP_1170	0.45	-0.0
1,345,579	+		PP_1170	0.45	-1.3
1,345,579	+		PP_1170	0.45	+1.4
1,345,579	+		PP_1170	0.45	+0.5
1,345,580	-				+1.2
1,345,580	-		PP_1170	0.45	+0.2
1,345,580	-		PP_1170	0.45	+2.2
1,345,980	-				-0.0
1,346,126	+				-0.7
1,346,126	+				-0.7
1,346,127	-				-0.1
1,346,206	+		PP_1171	0.15	-0.2
1,346,206	+		PP_1171	0.15	-0.3
1,346,206	+		PP_1171	0.15	+0.2
1,346,206	+		PP_1171	0.15	-1.2
1,346,206	+		PP_1171	0.15	-1.7
1,346,210	+		PP_1171	0.15	-2.4
1,346,210	+		PP_1171	0.15	-0.8
1,346,210	+		PP_1171	0.15	-0.0
1,346,211	-		PP_1171	0.15	+0.2
1,346,211	-		PP_1171	0.15	+0.3
1,346,211	-		PP_1171	0.15	+0.6
1,346,420	+		PP_1171	0.41	+0.0
1,346,433	-		PP_1171	0.43	+0.7
1,346,433	-		PP_1171	0.43	+0.6
1,346,433	-				+2.2
1,346,477	+		PP_1171	0.48	+0.3
1,346,477	+		PP_1171	0.48	+0.3
1,346,477	+		PP_1171	0.48	-0.2
1,346,477	+		PP_1171	0.48	+0.1
1,346,477	+		PP_1171	0.48	-0.5
1,346,477	+		PP_1171	0.48	+0.1
1,346,477	+		PP_1171	0.48	+0.2
1,346,478	-		PP_1171	0.49	-0.2
1,346,478	-		PP_1171	0.49	-0.4
1,346,528	+		PP_1171	0.55	-0.2
1,346,529	-		PP_1171	0.55	-0.0
1,346,597	+		PP_1171	0.63	+0.7
1,346,687	-				+1.2
1,346,703	+		PP_1171	0.76	+0.0
1,346,704	-		PP_1171	0.77	+0.3
1,346,737	-		PP_1171	0.81	-0.6
1,346,807	+		PP_1171	0.89	+0.4
1,346,910	-				+0.2