Strain Fitness in Pseudomonas putida KT2440 around PP_0782

Experiment: Adaptation in M9 media timecourse 2; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 2; day 3
897,979	-				+0.1
898,329	-		PP_0781	0.63	-0.0
898,329	-		PP_0781	0.63	-0.2
898,329	-		PP_0781	0.63	+0.1
898,483	+				-1.2
898,901	-				-0.3
898,935	+				-1.4
898,935	+				+0.2
899,165	+		PP_0782	0.38	-0.2
899,165	+		PP_0782	0.38	-0.0
899,295	+		PP_0782	0.59	-0.4
899,296	-		PP_0782	0.59	-0.1
899,299	+		PP_0782	0.60	-1.5
899,392	+		PP_0782	0.75	-1.8
899,393	-		PP_0782	0.75	-2.5
899,409	-		PP_0782	0.78	-0.7
899,522	+				-0.5
899,523	-				+0.7
899,547	-				-0.3
899,600	+				-1.2
899,601	-				+0.4
899,778	-				+0.1
899,781	+				-1.1
899,781	+				+0.1
899,871	-				-0.5
899,916	+				+0.2
900,008	+		PP_0784	0.19	-1.0
900,036	-		PP_0784	0.23	-1.1
900,128	-		PP_0784	0.38	+0.2
900,131	+		PP_0784	0.39	-0.3
900,215	-		PP_0784	0.52	-0.2
900,323	-		PP_0784	0.70	-1.6
900,357	+		PP_0784	0.75	+0.6
900,358	-		PP_0784	0.76	+0.8
900,453	+				+1.3
900,453	+				-0.2
900,453	+				-0.2
900,453	+				-1.6
900,454	-				+0.6
900,454	-				+0.6
900,454	-				+0.5
900,454	-				+0.0
900,456	+				-0.4
900,488	+				+0.8
900,489	-				+0.5
900,507	-				-0.4