Experiment: Adaptation in M9 media timecourse 2; day 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0665 and PP_0666 are separated by 16 nucleotides PP_0666 and PP_0667 are separated by 170 nucleotides PP_0667 and PP_0668 overlap by 4 nucleotides
PP_0665: PP_0665 - putative glyceraldehyde-3-phosphate dehydrogenase, at 773,394 to 774,812
_0665
PP_0666: PP_0666 - conserved protein of unknown function, at 774,829 to 775,191
_0666
PP_0667: PP_0667 - RNA polymerase sigma-70 factor, ECF subfamily, at 775,362 to 775,898
_0667
PP_0668: PP_0668 - putative Transmembrane sensor, at 775,895 to 776,860
_0668
Position (kb) 774
775
776 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 773.832 kb on - strand, within PP_0665 at 773.956 kb on - strand, within PP_0665 at 773.996 kb on - strand, within PP_0665 at 774.253 kb on + strand, within PP_0665 at 774.254 kb on - strand, within PP_0665 at 774.254 kb on - strand at 774.268 kb on - strand, within PP_0665 at 774.268 kb on - strand, within PP_0665 at 774.456 kb on + strand, within PP_0665 at 774.589 kb on - strand, within PP_0665 at 774.589 kb on - strand, within PP_0665 at 774.650 kb on + strand, within PP_0665 at 774.667 kb on + strand, within PP_0665 at 774.667 kb on + strand, within PP_0665 at 774.667 kb on + strand, within PP_0665 at 774.667 kb on + strand, within PP_0665 at 774.668 kb on - strand, within PP_0665 at 774.668 kb on - strand, within PP_0665 at 774.726 kb on + strand at 774.726 kb on + strand at 774.726 kb on + strand at 774.727 kb on - strand at 774.727 kb on - strand at 774.727 kb on - strand at 774.763 kb on - strand at 774.822 kb on + strand at 774.823 kb on - strand at 774.823 kb on - strand at 774.823 kb on - strand at 775.066 kb on + strand, within PP_0666 at 775.066 kb on + strand, within PP_0666 at 775.066 kb on + strand, within PP_0666 at 775.067 kb on - strand, within PP_0666 at 775.067 kb on - strand, within PP_0666 at 775.136 kb on - strand, within PP_0666 at 775.225 kb on + strand at 775.413 kb on + strand at 775.414 kb on - strand at 775.498 kb on + strand, within PP_0667 at 775.557 kb on + strand, within PP_0667 at 775.558 kb on - strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.569 kb on - strand, within PP_0667 at 775.727 kb on + strand, within PP_0667 at 775.727 kb on + strand, within PP_0667 at 775.728 kb on - strand, within PP_0667 at 775.833 kb on + strand, within PP_0667 at 775.834 kb on - strand, within PP_0667 at 775.847 kb on + strand at 775.847 kb on + strand at 775.847 kb on + strand at 775.848 kb on - strand at 775.848 kb on - strand at 775.848 kb on - strand at 775.848 kb on - strand at 775.848 kb on - strand at 775.848 kb on - strand at 775.848 kb on - strand at 775.851 kb on + strand at 775.851 kb on + strand at 775.851 kb on + strand at 775.851 kb on + strand at 775.852 kb on - strand at 775.852 kb on - strand at 775.852 kb on - strand at 776.043 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668
Per-strain Table
Position Strand Gene LocusTag Fraction Adaptation in M9 media timecourse 2; day 3 remove 773,832 - PP_0665 0.31 -0.4 773,956 - PP_0665 0.40 -0.1 773,996 - PP_0665 0.42 +0.2 774,253 + PP_0665 0.61 -1.1 774,254 - PP_0665 0.61 +0.2 774,254 - +1.2 774,268 - PP_0665 0.62 -0.2 774,268 - PP_0665 0.62 +0.7 774,456 + PP_0665 0.75 +0.1 774,589 - PP_0665 0.84 -0.7 774,589 - PP_0665 0.84 +0.2 774,650 + PP_0665 0.89 +0.1 774,667 + PP_0665 0.90 +0.5 774,667 + PP_0665 0.90 -0.4 774,667 + PP_0665 0.90 +0.5 774,667 + PP_0665 0.90 +0.5 774,668 - PP_0665 0.90 +0.4 774,668 - PP_0665 0.90 -0.3 774,726 + +0.4 774,726 + -0.2 774,726 + +0.5 774,727 - +0.3 774,727 - +0.4 774,727 - -0.8 774,763 - +0.8 774,822 + -0.0 774,823 - -0.4 774,823 - -0.4 774,823 - +0.4 775,066 + PP_0666 0.65 +0.3 775,066 + PP_0666 0.65 -0.5 775,066 + PP_0666 0.65 -0.2 775,067 - PP_0666 0.66 -1.8 775,067 - PP_0666 0.66 -0.8 775,136 - PP_0666 0.85 -0.8 775,225 + +0.6 775,413 + +0.6 775,414 - -0.5 775,498 + PP_0667 0.25 +0.1 775,557 + PP_0667 0.36 -0.6 775,558 - PP_0667 0.36 +0.4 775,568 + PP_0667 0.38 +0.3 775,568 + PP_0667 0.38 -0.0 775,568 + PP_0667 0.38 +2.8 775,568 + PP_0667 0.38 +1.6 775,568 + PP_0667 0.38 -0.4 775,568 + PP_0667 0.38 -0.5 775,569 - PP_0667 0.39 -1.1 775,727 + PP_0667 0.68 +0.7 775,727 + PP_0667 0.68 +0.0 775,728 - PP_0667 0.68 -0.8 775,833 + PP_0667 0.88 -0.6 775,834 - PP_0667 0.88 +0.4 775,847 + +0.6 775,847 + -1.5 775,847 + +0.3 775,848 - +0.6 775,848 - +0.1 775,848 - -0.8 775,848 - +0.4 775,848 - +0.2 775,848 - -1.4 775,848 - +0.5 775,851 + +0.5 775,851 + +1.0 775,851 + -0.2 775,851 + +0.2 775,852 - +0.1 775,852 - +0.2 775,852 - +0.8 776,043 - PP_0668 0.15 +1.1 776,047 - PP_0668 0.16 -0.4 776,047 - PP_0668 0.16 +0.5 776,047 - PP_0668 0.16 -0.5
Or see this region's nucleotide sequence