Strain Fitness in Agrobacterium fabrum C58 around Atu6151

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6150 and Atu6151 are separated by 76 nucleotidesAtu6151 and Atu6152 are separated by 275 nucleotides Atu6150: Atu6150 - P-450 monooxygenase, at 167,883 to 169,142 Atu6150 Atu6151: Atu6151 - P-450 monoxygenase, at 169,219 to 170,394 Atu6151 Atu6152: Atu6152 - transposase, at 170,670 to 171,593 Atu6152 Position (kb) 169 170 171Strain fitness (log2 ratio) -2 -1 0 1 2 3at 168.259 kb on - strand, within Atu6150at 168.271 kb on - strand, within Atu6150at 168.312 kb on - strand, within Atu6150at 168.442 kb on + strand, within Atu6150at 168.442 kb on + strand, within Atu6150at 168.442 kb on + strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.487 kb on - strand, within Atu6150at 168.493 kb on - strand, within Atu6150at 168.507 kb on + strand, within Atu6150at 168.538 kb on + strand, within Atu6150at 168.550 kb on - strand, within Atu6150at 168.550 kb on - strand, within Atu6150at 168.572 kb on + strand, within Atu6150at 168.580 kb on - strand, within Atu6150at 168.600 kb on + strand, within Atu6150at 168.644 kb on + strand, within Atu6150at 168.645 kb on + strand, within Atu6150at 168.688 kb on + strand, within Atu6150at 168.711 kb on + strand, within Atu6150at 168.723 kb on - strand, within Atu6150at 168.729 kb on - strand, within Atu6150at 168.767 kb on + strand, within Atu6150at 168.786 kb on - strand, within Atu6150at 168.795 kb on + strand, within Atu6150at 168.864 kb on - strand, within Atu6150at 168.870 kb on - strand, within Atu6150at 168.998 kb on - strand, within Atu6150at 169.027 kb on - strandat 169.027 kb on - strandat 169.029 kb on + strandat 169.029 kb on + strandat 169.029 kb on + strandat 169.037 kb on - strandat 169.037 kb on - strandat 169.048 kb on + strandat 169.048 kb on + strandat 169.048 kb on + strandat 169.048 kb on + strandat 169.048 kb on + strandat 169.048 kb on + strandat 169.056 kb on - strandat 169.059 kb on + strandat 169.062 kb on - strandat 169.077 kb on - strandat 169.083 kb on + strandat 169.083 kb on + strandat 169.091 kb on - strandat 169.091 kb on - strandat 169.091 kb on - strandat 169.192 kb on + strandat 169.200 kb on - strandat 169.267 kb on - strandat 169.313 kb on - strandat 169.315 kb on - strandat 169.379 kb on - strand, within Atu6151at 169.397 kb on + strand, within Atu6151at 169.405 kb on - strand, within Atu6151at 169.415 kb on - strand, within Atu6151at 169.415 kb on - strand, within Atu6151at 169.419 kb on + strand, within Atu6151at 169.431 kb on + strand, within Atu6151at 169.439 kb on + strand, within Atu6151at 169.488 kb on + strand, within Atu6151at 169.494 kb on + strand, within Atu6151at 169.500 kb on + strand, within Atu6151at 169.502 kb on - strand, within Atu6151at 169.502 kb on - strand, within Atu6151at 169.502 kb on - strand, within Atu6151at 169.503 kb on - strand, within Atu6151at 169.503 kb on - strand, within Atu6151at 169.592 kb on + strand, within Atu6151at 169.597 kb on + strand, within Atu6151at 169.600 kb on - strand, within Atu6151at 169.619 kb on - strand, within Atu6151at 169.631 kb on + strand, within Atu6151at 169.639 kb on - strand, within Atu6151at 169.639 kb on - strand, within Atu6151at 169.749 kb on - strand, within Atu6151at 169.794 kb on - strand, within Atu6151at 169.816 kb on + strand, within Atu6151at 169.967 kb on + strand, within Atu6151at 169.975 kb on - strand, within Atu6151at 169.977 kb on + strand, within Atu6151at 169.977 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.994 kb on - strand, within Atu6151at 170.008 kb on + strand, within Atu6151at 170.016 kb on - strand, within Atu6151at 170.036 kb on + strand, within Atu6151at 170.036 kb on + strand, within Atu6151at 170.036 kb on + strand, within Atu6151at 170.044 kb on - strand, within Atu6151at 170.128 kb on + strand, within Atu6151at 170.178 kb on + strand, within Atu6151at 170.191 kb on + strand, within Atu6151at 170.232 kb on - strand, within Atu6151at 170.317 kb on - strandat 170.332 kb on - strandat 170.343 kb on - strandat 170.343 kb on - strandat 170.343 kb on - strandat 170.343 kb on - strandat 170.414 kb on + strandat 170.438 kb on + strandat 170.521 kb on - strandat 170.553 kb on - strandat 170.553 kb on - strandat 170.668 kb on - strandat 170.700 kb on - strandat 170.711 kb on + strandat 170.711 kb on + strandat 170.718 kb on + strandat 170.801 kb on - strand, within Atu6152at 170.829 kb on + strand, within Atu6152at 170.835 kb on - strand, within Atu6152at 170.836 kb on - strand, within Atu6152at 170.880 kb on - strand, within Atu6152at 170.962 kb on - strand, within Atu6152at 170.962 kb on - strand, within Atu6152at 170.962 kb on - strand, within Atu6152at 170.993 kb on + strand, within Atu6152at 171.001 kb on - strand, within Atu6152at 171.028 kb on - strand, within Atu6152at 171.028 kb on - strand, within Atu6152at 171.028 kb on - strand, within Atu6152at 171.080 kb on + strand, within Atu6152at 171.088 kb on - strand, within Atu6152at 171.108 kb on - strand, within Atu6152at 171.121 kb on + strand, within Atu6152at 171.122 kb on - strand, within Atu6152at 171.141 kb on - strand, within Atu6152at 171.187 kb on + strand, within Atu6152at 171.261 kb on - strand, within Atu6152at 171.272 kb on + strand, within Atu6152at 171.272 kb on - strand, within Atu6152at 171.291 kb on - strand, within Atu6152at 171.291 kb on - strand, within Atu6152at 171.343 kb on - strand, within Atu6152

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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168,259 - Atu6150 0.30 +1.1
168,271 - Atu6150 0.31 +0.2
168,312 - Atu6150 0.34 -0.1
168,442 + Atu6150 0.44 -0.8
168,442 + Atu6150 0.44 -0.8
168,442 + Atu6150 0.44 -1.5
168,450 - Atu6150 0.45 -0.3
168,450 - Atu6150 0.45 +2.8
168,450 - Atu6150 0.45 +0.2
168,450 - Atu6150 0.45 +1.4
168,450 - Atu6150 0.45 +1.4
168,450 - Atu6150 0.45 -0.8
168,450 - Atu6150 0.45 +1.8
168,450 - Atu6150 0.45 -0.3
168,487 - Atu6150 0.48 +0.0
168,493 - Atu6150 0.48 +0.5
168,507 + Atu6150 0.50 -0.1
168,538 + Atu6150 0.52 +0.7
168,550 - Atu6150 0.53 -1.1
168,550 - Atu6150 0.53 +0.0
168,572 + Atu6150 0.55 +0.2
168,580 - Atu6150 0.55 +0.5
168,600 + Atu6150 0.57 -0.2
168,644 + Atu6150 0.60 -0.2
168,645 + Atu6150 0.60 -0.0
168,688 + Atu6150 0.64 -1.4
168,711 + Atu6150 0.66 +1.2
168,723 - Atu6150 0.67 +0.1
168,729 - Atu6150 0.67 -0.3
168,767 + Atu6150 0.70 -0.3
168,786 - Atu6150 0.72 -0.3
168,795 + Atu6150 0.72 +0.1
168,864 - Atu6150 0.78 -0.9
168,870 - Atu6150 0.78 -0.7
168,998 - Atu6150 0.88 +0.2
169,027 - -0.8
169,027 - -0.4
169,029 + -0.2
169,029 + +1.6
169,029 + +1.0
169,037 - +1.7
169,037 - -0.1
169,048 + +0.7
169,048 + +0.2
169,048 + +0.0
169,048 + +0.0
169,048 + +0.3
169,048 + -1.6
169,056 - -0.3
169,059 + -1.0
169,062 - -0.9
169,077 - +0.6
169,083 + +0.2
169,083 + +1.8
169,091 - -0.1
169,091 - +2.8
169,091 - -1.3
169,192 + -1.8
169,200 - -0.3
169,267 - -0.1
169,313 - +0.2
169,315 - +0.3
169,379 - Atu6151 0.14 -0.2
169,397 + Atu6151 0.15 -0.5
169,405 - Atu6151 0.16 -1.4
169,415 - Atu6151 0.17 +0.3
169,415 - Atu6151 0.17 +1.2
169,419 + Atu6151 0.17 +1.1
169,431 + Atu6151 0.18 -0.8
169,439 + Atu6151 0.19 -0.5
169,488 + Atu6151 0.23 +0.6
169,494 + Atu6151 0.23 +0.0
169,500 + Atu6151 0.24 +1.8
169,502 - Atu6151 0.24 +1.8
169,502 - Atu6151 0.24 +0.6
169,502 - Atu6151 0.24 +0.0
169,503 - Atu6151 0.24 -0.8
169,503 - Atu6151 0.24 -1.0
169,592 + Atu6151 0.32 +2.8
169,597 + Atu6151 0.32 +0.8
169,600 - Atu6151 0.32 +0.2
169,619 - Atu6151 0.34 -0.5
169,631 + Atu6151 0.35 +0.6
169,639 - Atu6151 0.36 -0.3
169,639 - Atu6151 0.36 +0.6
169,749 - Atu6151 0.45 -0.3
169,794 - Atu6151 0.49 -0.8
169,816 + Atu6151 0.51 +1.1
169,967 + Atu6151 0.64 +0.1
169,975 - Atu6151 0.64 +0.3
169,977 + Atu6151 0.64 +0.0
169,977 + Atu6151 0.64 -0.4
169,986 + Atu6151 0.65 -0.4
169,986 + Atu6151 0.65 -1.7
169,986 + Atu6151 0.65 -1.3
169,986 + Atu6151 0.65 -0.9
169,986 + Atu6151 0.65 +2.8
169,986 + Atu6151 0.65 +0.2
169,986 + Atu6151 0.65 +1.0
169,994 - Atu6151 0.66 +2.2
170,008 + Atu6151 0.67 +1.3
170,016 - Atu6151 0.68 +0.4
170,036 + Atu6151 0.69 +0.2
170,036 + Atu6151 0.69 -0.5
170,036 + Atu6151 0.69 -2.0
170,044 - Atu6151 0.70 -0.1
170,128 + Atu6151 0.77 -0.8
170,178 + Atu6151 0.82 +0.2
170,191 + Atu6151 0.83 -1.0
170,232 - Atu6151 0.86 +0.8
170,317 - +1.8
170,332 - -1.2
170,343 - -0.2
170,343 - +0.1
170,343 - +1.2
170,343 - -1.1
170,414 + +0.7
170,438 + -0.1
170,521 - +1.2
170,553 - -0.4
170,553 - +0.2
170,668 - +0.9
170,700 - -0.4
170,711 + +0.8
170,711 + -0.1
170,718 + +1.1
170,801 - Atu6152 0.14 +1.6
170,829 + Atu6152 0.17 +0.3
170,835 - Atu6152 0.18 -1.1
170,836 - Atu6152 0.18 +0.8
170,880 - Atu6152 0.23 +1.2
170,962 - Atu6152 0.32 -0.0
170,962 - Atu6152 0.32 -0.4
170,962 - Atu6152 0.32 -0.8
170,993 + Atu6152 0.35 +1.2
171,001 - Atu6152 0.36 +0.4
171,028 - Atu6152 0.39 +1.5
171,028 - Atu6152 0.39 +1.4
171,028 - Atu6152 0.39 -0.6
171,080 + Atu6152 0.44 -0.2
171,088 - Atu6152 0.45 +0.5
171,108 - Atu6152 0.47 +1.2
171,121 + Atu6152 0.49 -0.5
171,122 - Atu6152 0.49 -0.2
171,141 - Atu6152 0.51 -0.5
171,187 + Atu6152 0.56 +1.4
171,261 - Atu6152 0.64 -0.7
171,272 + Atu6152 0.65 -1.5
171,272 - Atu6152 0.65 -0.0
171,291 - Atu6152 0.67 +0.7
171,291 - Atu6152 0.67 +1.8
171,343 - Atu6152 0.73 -0.2

Or see this region's nucleotide sequence