Strain Fitness in Agrobacterium fabrum C58 around Atu6051

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6049 and Atu6050 are separated by 233 nucleotidesAtu6050 and Atu6051 are separated by 8 nucleotidesAtu6051 and Atu6052 are separated by 167 nucleotides Atu6049: Atu6049 - hypothetical protein, at 61,460 to 62,647 Atu6049 Atu6050: Atu6050 - conserved hypothetical protein, at 62,881 to 63,597 Atu6050 Atu6051: Atu6051 - conserved hypothetical protein, at 63,606 to 64,190 Atu6051 Atu6052: Atu6052 - conserved hypothetical protein, at 64,358 to 65,185 Atu6052 Position (kb) 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2 3at 62.661 kb on + strandat 62.734 kb on + strandat 62.734 kb on - strandat 62.787 kb on + strandat 62.793 kb on - strandat 62.795 kb on - strandat 62.800 kb on - strandat 62.919 kb on + strandat 62.927 kb on - strandat 62.983 kb on - strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.023 kb on - strand, within Atu6050at 63.023 kb on - strand, within Atu6050at 63.106 kb on + strand, within Atu6050at 63.167 kb on - strand, within Atu6050at 63.200 kb on + strand, within Atu6050at 63.207 kb on - strand, within Atu6050at 63.218 kb on + strand, within Atu6050at 63.242 kb on - strand, within Atu6050at 63.330 kb on + strand, within Atu6050at 63.337 kb on + strand, within Atu6050at 63.357 kb on + strand, within Atu6050at 63.364 kb on + strand, within Atu6050at 63.367 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.429 kb on - strand, within Atu6050at 63.446 kb on + strand, within Atu6050at 63.523 kb on - strand, within Atu6050at 63.573 kb on - strandat 63.625 kb on + strandat 63.635 kb on - strandat 63.648 kb on - strandat 63.678 kb on + strand, within Atu6051at 63.679 kb on - strand, within Atu6051at 63.758 kb on + strand, within Atu6051at 63.758 kb on + strand, within Atu6051at 63.758 kb on + strand, within Atu6051at 63.766 kb on - strand, within Atu6051at 63.766 kb on - strand, within Atu6051at 63.779 kb on - strand, within Atu6051at 63.856 kb on - strand, within Atu6051at 63.878 kb on + strand, within Atu6051at 63.886 kb on - strand, within Atu6051at 63.935 kb on - strand, within Atu6051at 63.982 kb on + strand, within Atu6051at 63.990 kb on - strand, within Atu6051at 63.990 kb on - strand, within Atu6051at 64.018 kb on - strand, within Atu6051at 64.018 kb on - strand, within Atu6051at 64.031 kb on + strand, within Atu6051at 64.039 kb on - strand, within Atu6051at 64.039 kb on - strand, within Atu6051at 64.071 kb on + strand, within Atu6051at 64.071 kb on - strand, within Atu6051at 64.082 kb on + strand, within Atu6051at 64.090 kb on - strand, within Atu6051at 64.124 kb on - strand, within Atu6051at 64.167 kb on + strandat 64.172 kb on + strandat 64.177 kb on + strandat 64.180 kb on - strandat 64.203 kb on - strandat 64.317 kb on + strandat 64.399 kb on + strandat 64.412 kb on - strandat 64.422 kb on + strandat 64.422 kb on + strandat 64.430 kb on - strandat 64.430 kb on - strandat 64.432 kb on + strandat 64.449 kb on - strand, within Atu6052at 64.477 kb on - strand, within Atu6052at 64.480 kb on + strand, within Atu6052at 64.482 kb on + strand, within Atu6052at 64.482 kb on + strand, within Atu6052at 64.482 kb on + strand, within Atu6052at 64.490 kb on - strand, within Atu6052at 64.490 kb on - strand, within Atu6052at 64.493 kb on + strand, within Atu6052at 64.524 kb on + strand, within Atu6052at 64.563 kb on - strand, within Atu6052at 64.714 kb on + strand, within Atu6052at 64.722 kb on - strand, within Atu6052at 64.733 kb on + strand, within Atu6052at 64.741 kb on - strand, within Atu6052at 64.788 kb on + strand, within Atu6052at 64.798 kb on + strand, within Atu6052at 64.805 kb on + strand, within Atu6052at 64.806 kb on - strand, within Atu6052at 64.806 kb on - strand, within Atu6052at 64.806 kb on - strand, within Atu6052at 64.853 kb on - strand, within Atu6052at 64.853 kb on - strand, within Atu6052at 64.905 kb on - strand, within Atu6052at 64.921 kb on + strand, within Atu6052at 64.921 kb on + strand, within Atu6052at 65.008 kb on + strand, within Atu6052at 65.013 kb on + strand, within Atu6052at 65.022 kb on - strand, within Atu6052at 65.041 kb on + strand, within Atu6052at 65.047 kb on + strand, within Atu6052at 65.047 kb on + strand, within Atu6052at 65.085 kb on - strand, within Atu6052at 65.095 kb on + strand, within Atu6052at 65.095 kb on + strand, within Atu6052at 65.095 kb on + strand, within Atu6052at 65.103 kb on - strandat 65.157 kb on + strandat 65.165 kb on - strandat 65.179 kb on + strandat 65.187 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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62,661 + -0.8
62,734 + +0.2
62,734 - +1.8
62,787 + -0.9
62,793 - +1.2
62,795 - -0.0
62,800 - +0.7
62,919 + +0.4
62,927 - +0.3
62,983 - Atu6050 0.14 +0.2
63,015 + Atu6050 0.19 +2.8
63,015 + Atu6050 0.19 +0.2
63,015 + Atu6050 0.19 +0.8
63,015 + Atu6050 0.19 +1.1
63,015 + Atu6050 0.19 +1.2
63,015 + Atu6050 0.19 +0.0
63,015 + Atu6050 0.19 -0.3
63,023 - Atu6050 0.20 +1.8
63,023 - Atu6050 0.20 -0.6
63,106 + Atu6050 0.31 -0.8
63,167 - Atu6050 0.40 +0.2
63,200 + Atu6050 0.44 -0.1
63,207 - Atu6050 0.45 +1.2
63,218 + Atu6050 0.47 -0.6
63,242 - Atu6050 0.50 +2.8
63,330 + Atu6050 0.63 +0.1
63,337 + Atu6050 0.64 +0.8
63,357 + Atu6050 0.66 -0.8
63,364 + Atu6050 0.67 +1.2
63,367 + Atu6050 0.68 +0.7
63,378 + Atu6050 0.69 +0.4
63,378 + Atu6050 0.69 +0.5
63,378 + Atu6050 0.69 -0.3
63,378 + Atu6050 0.69 +0.5
63,378 + Atu6050 0.69 +0.4
63,378 + Atu6050 0.69 +0.7
63,378 + Atu6050 0.69 +3.4
63,378 + Atu6050 0.69 -1.0
63,378 + Atu6050 0.69 -0.7
63,378 + Atu6050 0.69 +0.7
63,378 + Atu6050 0.69 +0.8
63,378 + Atu6050 0.69 -2.2
63,378 + Atu6050 0.69 +0.6
63,386 - Atu6050 0.70 -0.0
63,386 - Atu6050 0.70 +0.5
63,386 - Atu6050 0.70 -1.3
63,386 - Atu6050 0.70 -0.8
63,386 - Atu6050 0.70 +0.5
63,386 - Atu6050 0.70 +1.5
63,386 - Atu6050 0.70 +0.8
63,386 - Atu6050 0.70 -0.6
63,429 - Atu6050 0.76 +1.2
63,446 + Atu6050 0.79 -1.1
63,523 - Atu6050 0.90 -0.3
63,573 - -0.3
63,625 + +0.0
63,635 - +0.5
63,648 - +1.0
63,678 + Atu6051 0.12 +1.8
63,679 - Atu6051 0.12 +0.6
63,758 + Atu6051 0.26 -0.3
63,758 + Atu6051 0.26 +0.1
63,758 + Atu6051 0.26 +0.1
63,766 - Atu6051 0.27 -0.2
63,766 - Atu6051 0.27 +1.4
63,779 - Atu6051 0.30 +0.2
63,856 - Atu6051 0.43 +0.5
63,878 + Atu6051 0.46 -0.9
63,886 - Atu6051 0.48 +1.0
63,935 - Atu6051 0.56 +0.2
63,982 + Atu6051 0.64 +0.2
63,990 - Atu6051 0.66 +0.8
63,990 - Atu6051 0.66 -0.3
64,018 - Atu6051 0.70 +0.2
64,018 - Atu6051 0.70 +0.5
64,031 + Atu6051 0.73 -0.9
64,039 - Atu6051 0.74 +0.5
64,039 - Atu6051 0.74 +1.2
64,071 + Atu6051 0.79 +0.0
64,071 - Atu6051 0.79 -1.2
64,082 + Atu6051 0.81 -1.3
64,090 - Atu6051 0.83 -0.9
64,124 - Atu6051 0.89 -0.2
64,167 + +0.2
64,172 + -0.0
64,177 + -1.3
64,180 - +2.8
64,203 - -2.0
64,317 + -0.4
64,399 + +0.4
64,412 - +0.8
64,422 + -0.3
64,422 + -1.1
64,430 - +1.3
64,430 - +0.1
64,432 + -0.6
64,449 - Atu6052 0.11 +1.4
64,477 - Atu6052 0.14 +3.2
64,480 + Atu6052 0.15 +1.0
64,482 + Atu6052 0.15 +0.5
64,482 + Atu6052 0.15 +1.8
64,482 + Atu6052 0.15 +1.6
64,490 - Atu6052 0.16 +0.3
64,490 - Atu6052 0.16 -1.2
64,493 + Atu6052 0.16 +0.2
64,524 + Atu6052 0.20 +1.8
64,563 - Atu6052 0.25 -0.6
64,714 + Atu6052 0.43 +0.2
64,722 - Atu6052 0.44 +0.9
64,733 + Atu6052 0.45 +0.5
64,741 - Atu6052 0.46 +0.4
64,788 + Atu6052 0.52 -0.9
64,798 + Atu6052 0.53 +0.2
64,805 + Atu6052 0.54 +1.8
64,806 - Atu6052 0.54 +2.8
64,806 - Atu6052 0.54 -0.3
64,806 - Atu6052 0.54 +0.5
64,853 - Atu6052 0.60 +0.0
64,853 - Atu6052 0.60 +0.0
64,905 - Atu6052 0.66 +0.3
64,921 + Atu6052 0.68 -0.6
64,921 + Atu6052 0.68 +0.5
65,008 + Atu6052 0.79 +2.8
65,013 + Atu6052 0.79 +0.6
65,022 - Atu6052 0.80 +0.1
65,041 + Atu6052 0.82 +1.0
65,047 + Atu6052 0.83 +0.5
65,047 + Atu6052 0.83 -0.6
65,085 - Atu6052 0.88 +0.5
65,095 + Atu6052 0.89 -0.2
65,095 + Atu6052 0.89 +2.8
65,095 + Atu6052 0.89 -0.6
65,103 - +0.8
65,157 + +0.8
65,165 - +1.1
65,179 + -0.9
65,187 - -0.2

Or see this region's nucleotide sequence