Strain Fitness in Agrobacterium fabrum C58 around Atu6023

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6022 and Atu6023 are separated by 3 nucleotidesAtu6023 and Atu6024 are separated by 119 nucleotides Atu6022: Atu6022 - N-methylhydantoinase A/acetone carboxylase, beta subunit, at 31,704 to 33,740 Atu6022 Atu6023: Atu6023 - N-methylhydantoinase B/acetone carboxylase, alpha subunit, at 33,744 to 35,699 Atu6023 Atu6024: Atu6024 - transcriptional regulator, LysR family, at 35,819 to 36,739 Atu6024 Position (kb) 33 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.750 kb on + strand, within Atu6022at 32.751 kb on - strand, within Atu6022at 32.751 kb on - strand, within Atu6022at 32.751 kb on - strand, within Atu6022at 32.751 kb on - strand, within Atu6022at 32.751 kb on - strand, within Atu6022at 32.758 kb on - strand, within Atu6022at 32.758 kb on - strand, within Atu6022at 32.758 kb on - strand, within Atu6022at 32.758 kb on - strand, within Atu6022at 32.758 kb on - strand, within Atu6022at 32.758 kb on - strand, within Atu6022at 32.758 kb on - strand, within Atu6022at 32.758 kb on - strand, within Atu6022at 32.758 kb on - strand, within Atu6022at 32.758 kb on - strand, within Atu6022at 32.851 kb on + strand, within Atu6022at 32.859 kb on - strand, within Atu6022at 32.916 kb on - strand, within Atu6022at 32.919 kb on + strand, within Atu6022at 32.919 kb on + strand, within Atu6022at 32.927 kb on - strand, within Atu6022at 32.960 kb on + strand, within Atu6022at 32.979 kb on + strand, within Atu6022at 32.979 kb on + strand, within Atu6022at 32.979 kb on + strand, within Atu6022at 32.979 kb on + strand, within Atu6022at 32.979 kb on + strand, within Atu6022at 32.979 kb on + strand, within Atu6022at 32.987 kb on - strand, within Atu6022at 33.018 kb on + strand, within Atu6022at 33.027 kb on - strand, within Atu6022at 33.060 kb on + strand, within Atu6022at 33.102 kb on - strand, within Atu6022at 33.114 kb on - strand, within Atu6022at 33.114 kb on - strand, within Atu6022at 33.140 kb on - strand, within Atu6022at 33.158 kb on - strand, within Atu6022at 33.217 kb on + strand, within Atu6022at 33.267 kb on + strand, within Atu6022at 33.309 kb on + strand, within Atu6022at 33.327 kb on - strand, within Atu6022at 33.331 kb on + strand, within Atu6022at 33.411 kb on + strand, within Atu6022at 33.432 kb on + strand, within Atu6022at 33.478 kb on - strand, within Atu6022at 33.487 kb on + strand, within Atu6022at 33.501 kb on + strand, within Atu6022at 33.509 kb on - strand, within Atu6022at 33.517 kb on - strand, within Atu6022at 33.591 kb on - strandat 33.597 kb on - strandat 33.715 kb on + strandat 33.723 kb on - strandat 33.729 kb on + strandat 33.739 kb on + strandat 33.815 kb on + strandat 33.863 kb on - strandat 33.908 kb on - strandat 33.918 kb on - strandat 33.956 kb on + strand, within Atu6023at 33.976 kb on + strand, within Atu6023at 33.977 kb on + strand, within Atu6023at 34.038 kb on + strand, within Atu6023at 34.048 kb on + strand, within Atu6023at 34.048 kb on + strand, within Atu6023at 34.051 kb on - strand, within Atu6023at 34.058 kb on + strand, within Atu6023at 34.058 kb on + strand, within Atu6023at 34.058 kb on + strand, within Atu6023at 34.147 kb on + strand, within Atu6023at 34.160 kb on - strand, within Atu6023at 34.208 kb on + strand, within Atu6023at 34.229 kb on - strand, within Atu6023at 34.277 kb on + strand, within Atu6023at 34.308 kb on + strand, within Atu6023at 34.318 kb on + strand, within Atu6023at 34.389 kb on + strand, within Atu6023at 34.397 kb on - strand, within Atu6023at 34.424 kb on + strand, within Atu6023at 34.424 kb on + strand, within Atu6023at 34.432 kb on - strand, within Atu6023at 34.434 kb on + strand, within Atu6023at 34.446 kb on + strand, within Atu6023at 34.446 kb on + strand, within Atu6023at 34.446 kb on + strand, within Atu6023at 34.446 kb on + strand, within Atu6023at 34.446 kb on + strand, within Atu6023at 34.454 kb on - strand, within Atu6023at 34.454 kb on - strand, within Atu6023at 34.454 kb on - strand, within Atu6023at 34.454 kb on - strand, within Atu6023at 34.465 kb on + strand, within Atu6023at 34.465 kb on + strand, within Atu6023at 34.465 kb on + strand, within Atu6023at 34.465 kb on + strand, within Atu6023at 34.465 kb on + strand, within Atu6023at 34.473 kb on - strand, within Atu6023at 34.473 kb on - strand, within Atu6023at 34.473 kb on - strand, within Atu6023at 34.473 kb on - strand, within Atu6023at 34.483 kb on - strand, within Atu6023at 34.518 kb on + strand, within Atu6023at 34.524 kb on - strand, within Atu6023at 34.576 kb on + strand, within Atu6023at 34.584 kb on - strand, within Atu6023at 34.607 kb on + strand, within Atu6023at 34.607 kb on + strand, within Atu6023at 34.607 kb on + strand, within Atu6023at 34.612 kb on + strand, within Atu6023at 34.615 kb on - strand, within Atu6023at 34.615 kb on - strand, within Atu6023at 34.617 kb on + strand, within Atu6023at 34.620 kb on - strand, within Atu6023at 34.620 kb on - strand, within Atu6023at 34.626 kb on + strand, within Atu6023at 34.633 kb on + strand, within Atu6023at 34.633 kb on + strand, within Atu6023at 34.641 kb on - strand, within Atu6023at 34.641 kb on - strand, within Atu6023at 34.679 kb on + strand, within Atu6023at 34.696 kb on + strand, within Atu6023at 34.704 kb on - strand, within Atu6023at 34.724 kb on - strand, within Atu6023at 34.736 kb on - strand, within Atu6023at 34.756 kb on - strand, within Atu6023at 34.785 kb on + strand, within Atu6023at 34.785 kb on + strand, within Atu6023at 34.793 kb on - strand, within Atu6023at 34.838 kb on - strand, within Atu6023at 34.876 kb on - strand, within Atu6023at 34.882 kb on - strand, within Atu6023at 34.884 kb on + strand, within Atu6023at 34.884 kb on + strand, within Atu6023at 34.884 kb on + strand, within Atu6023at 34.884 kb on + strand, within Atu6023at 34.892 kb on - strand, within Atu6023at 34.892 kb on - strand, within Atu6023at 34.960 kb on + strand, within Atu6023at 34.965 kb on + strand, within Atu6023at 34.968 kb on - strand, within Atu6023at 34.968 kb on - strand, within Atu6023at 34.983 kb on - strand, within Atu6023at 34.983 kb on - strand, within Atu6023at 35.046 kb on + strand, within Atu6023at 35.054 kb on - strand, within Atu6023at 35.181 kb on - strand, within Atu6023at 35.204 kb on - strand, within Atu6023at 35.209 kb on - strand, within Atu6023at 35.213 kb on + strand, within Atu6023at 35.221 kb on - strand, within Atu6023at 35.259 kb on + strand, within Atu6023at 35.276 kb on + strand, within Atu6023at 35.284 kb on - strand, within Atu6023at 35.325 kb on - strand, within Atu6023at 35.409 kb on + strand, within Atu6023at 35.457 kb on - strand, within Atu6023at 35.531 kb on - strandat 35.536 kb on - strandat 35.546 kb on - strandat 35.575 kb on + strandat 35.575 kb on + strandat 35.575 kb on + strandat 35.575 kb on + strandat 35.575 kb on + strandat 35.575 kb on + strandat 35.575 kb on + strandat 35.575 kb on + strandat 35.583 kb on - strandat 35.583 kb on - strandat 35.583 kb on - strandat 35.583 kb on - strandat 35.583 kb on - strandat 35.583 kb on - strandat 35.598 kb on - strandat 35.724 kb on + strandat 35.725 kb on + strandat 35.733 kb on - strandat 35.742 kb on - strandat 35.783 kb on + strandat 35.874 kb on + strandat 35.934 kb on + strand, within Atu6024at 35.992 kb on - strand, within Atu6024at 36.029 kb on + strand, within Atu6024at 36.029 kb on + strand, within Atu6024at 36.029 kb on + strand, within Atu6024at 36.037 kb on - strand, within Atu6024at 36.037 kb on - strand, within Atu6024at 36.037 kb on - strand, within Atu6024at 36.039 kb on + strand, within Atu6024at 36.042 kb on - strand, within Atu6024at 36.055 kb on + strand, within Atu6024at 36.063 kb on - strand, within Atu6024at 36.236 kb on + strand, within Atu6024at 36.251 kb on + strand, within Atu6024at 36.258 kb on + strand, within Atu6024at 36.307 kb on + strand, within Atu6024at 36.355 kb on + strand, within Atu6024at 36.355 kb on + strand, within Atu6024at 36.355 kb on + strand, within Atu6024at 36.363 kb on - strand, within Atu6024at 36.363 kb on - strand, within Atu6024at 36.386 kb on + strand, within Atu6024at 36.400 kb on - strand, within Atu6024at 36.453 kb on - strand, within Atu6024at 36.559 kb on + strand, within Atu6024at 36.559 kb on + strand, within Atu6024at 36.562 kb on - strand, within Atu6024at 36.562 kb on - strand, within Atu6024at 36.562 kb on - strand, within Atu6024at 36.562 kb on - strand, within Atu6024at 36.571 kb on + strand, within Atu6024at 36.579 kb on + strand, within Atu6024at 36.579 kb on - strand, within Atu6024at 36.579 kb on - strand, within Atu6024at 36.581 kb on + strand, within Atu6024at 36.581 kb on + strand, within Atu6024at 36.597 kb on + strand, within Atu6024at 36.597 kb on + strand, within Atu6024at 36.597 kb on + strand, within Atu6024at 36.597 kb on + strand, within Atu6024at 36.605 kb on - strand, within Atu6024at 36.605 kb on - strand, within Atu6024at 36.605 kb on - strand, within Atu6024at 36.605 kb on - strand, within Atu6024at 36.639 kb on + strand, within Atu6024

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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32,750 + Atu6022 0.51 +0.4
32,750 + Atu6022 0.51 +0.5
32,750 + Atu6022 0.51 +2.8
32,750 + Atu6022 0.51 +2.8
32,750 + Atu6022 0.51 -0.0
32,750 + Atu6022 0.51 -0.1
32,750 + Atu6022 0.51 +0.3
32,750 + Atu6022 0.51 +2.4
32,750 + Atu6022 0.51 +0.0
32,750 + Atu6022 0.51 +3.8
32,750 + Atu6022 0.51 -0.4
32,750 + Atu6022 0.51 +0.1
32,750 + Atu6022 0.51 -1.2
32,750 + Atu6022 0.51 +0.8
32,750 + Atu6022 0.51 -0.5
32,751 - Atu6022 0.51 -1.8
32,751 - Atu6022 0.51 +1.7
32,751 - Atu6022 0.51 +0.8
32,751 - Atu6022 0.51 -0.2
32,751 - Atu6022 0.51 +0.5
32,758 - Atu6022 0.52 +2.2
32,758 - Atu6022 0.52 +0.1
32,758 - Atu6022 0.52 +0.7
32,758 - Atu6022 0.52 +0.3
32,758 - Atu6022 0.52 +1.1
32,758 - Atu6022 0.52 +1.8
32,758 - Atu6022 0.52 -0.1
32,758 - Atu6022 0.52 -3.1
32,758 - Atu6022 0.52 +0.2
32,758 - Atu6022 0.52 -0.2
32,851 + Atu6022 0.56 -0.1
32,859 - Atu6022 0.57 +1.2
32,916 - Atu6022 0.59 +0.6
32,919 + Atu6022 0.60 +0.7
32,919 + Atu6022 0.60 +2.5
32,927 - Atu6022 0.60 +0.7
32,960 + Atu6022 0.62 +0.8
32,979 + Atu6022 0.63 -0.2
32,979 + Atu6022 0.63 -0.9
32,979 + Atu6022 0.63 -0.6
32,979 + Atu6022 0.63 -1.2
32,979 + Atu6022 0.63 -0.3
32,979 + Atu6022 0.63 +2.8
32,987 - Atu6022 0.63 +1.6
33,018 + Atu6022 0.65 -1.9
33,027 - Atu6022 0.65 -1.6
33,060 + Atu6022 0.67 +0.1
33,102 - Atu6022 0.69 +0.7
33,114 - Atu6022 0.69 +1.3
33,114 - Atu6022 0.69 +1.0
33,140 - Atu6022 0.70 +0.4
33,158 - Atu6022 0.71 -0.1
33,217 + Atu6022 0.74 +0.8
33,267 + Atu6022 0.77 +0.7
33,309 + Atu6022 0.79 +1.2
33,327 - Atu6022 0.80 -0.8
33,331 + Atu6022 0.80 -0.4
33,411 + Atu6022 0.84 +1.8
33,432 + Atu6022 0.85 +0.4
33,478 - Atu6022 0.87 +0.5
33,487 + Atu6022 0.88 +1.8
33,501 + Atu6022 0.88 -0.3
33,509 - Atu6022 0.89 -0.4
33,517 - Atu6022 0.89 +1.2
33,591 - -1.3
33,597 - +2.2
33,715 + +0.8
33,723 - +2.8
33,729 + +0.4
33,739 + +1.1
33,815 + +0.5
33,863 - -1.4
33,908 - +0.4
33,918 - +0.8
33,956 + Atu6023 0.11 -0.0
33,976 + Atu6023 0.12 +0.2
33,977 + Atu6023 0.12 +0.2
34,038 + Atu6023 0.15 +2.8
34,048 + Atu6023 0.16 +0.5
34,048 + Atu6023 0.16 -0.9
34,051 - Atu6023 0.16 +1.5
34,058 + Atu6023 0.16 -0.3
34,058 + Atu6023 0.16 +0.8
34,058 + Atu6023 0.16 +0.3
34,147 + Atu6023 0.21 +0.3
34,160 - Atu6023 0.21 -0.2
34,208 + Atu6023 0.24 +1.7
34,229 - Atu6023 0.25 +0.9
34,277 + Atu6023 0.27 +2.2
34,308 + Atu6023 0.29 +1.2
34,318 + Atu6023 0.29 +0.3
34,389 + Atu6023 0.33 -1.7
34,397 - Atu6023 0.33 -0.8
34,424 + Atu6023 0.35 -0.2
34,424 + Atu6023 0.35 -0.1
34,432 - Atu6023 0.35 -1.2
34,434 + Atu6023 0.35 -1.1
34,446 + Atu6023 0.36 +1.5
34,446 + Atu6023 0.36 +2.3
34,446 + Atu6023 0.36 -1.1
34,446 + Atu6023 0.36 -0.3
34,446 + Atu6023 0.36 +1.3
34,454 - Atu6023 0.36 -1.9
34,454 - Atu6023 0.36 -0.4
34,454 - Atu6023 0.36 +0.2
34,454 - Atu6023 0.36 +1.2
34,465 + Atu6023 0.37 +1.2
34,465 + Atu6023 0.37 -2.4
34,465 + Atu6023 0.37 -0.1
34,465 + Atu6023 0.37 +0.2
34,465 + Atu6023 0.37 +0.2
34,473 - Atu6023 0.37 -0.2
34,473 - Atu6023 0.37 +3.8
34,473 - Atu6023 0.37 +3.8
34,473 - Atu6023 0.37 -0.9
34,483 - Atu6023 0.38 +1.4
34,518 + Atu6023 0.40 +0.5
34,524 - Atu6023 0.40 +2.2
34,576 + Atu6023 0.43 +1.2
34,584 - Atu6023 0.43 +1.1
34,607 + Atu6023 0.44 -0.2
34,607 + Atu6023 0.44 +2.1
34,607 + Atu6023 0.44 +0.1
34,612 + Atu6023 0.44 +1.2
34,615 - Atu6023 0.45 -0.4
34,615 - Atu6023 0.45 -0.0
34,617 + Atu6023 0.45 +0.2
34,620 - Atu6023 0.45 -0.8
34,620 - Atu6023 0.45 -0.2
34,626 + Atu6023 0.45 -0.3
34,633 + Atu6023 0.45 +1.8
34,633 + Atu6023 0.45 +0.2
34,641 - Atu6023 0.46 -0.5
34,641 - Atu6023 0.46 +0.6
34,679 + Atu6023 0.48 +1.8
34,696 + Atu6023 0.49 +0.8
34,704 - Atu6023 0.49 -0.3
34,724 - Atu6023 0.50 +0.1
34,736 - Atu6023 0.51 +2.8
34,756 - Atu6023 0.52 +0.8
34,785 + Atu6023 0.53 +0.8
34,785 + Atu6023 0.53 -0.2
34,793 - Atu6023 0.54 +1.2
34,838 - Atu6023 0.56 +1.0
34,876 - Atu6023 0.58 +2.8
34,882 - Atu6023 0.58 +1.5
34,884 + Atu6023 0.58 +1.3
34,884 + Atu6023 0.58 +1.1
34,884 + Atu6023 0.58 -3.1
34,884 + Atu6023 0.58 -1.0
34,892 - Atu6023 0.59 +2.8
34,892 - Atu6023 0.59 -0.0
34,960 + Atu6023 0.62 -0.9
34,965 + Atu6023 0.62 -1.3
34,968 - Atu6023 0.63 +0.2
34,968 - Atu6023 0.63 +1.2
34,983 - Atu6023 0.63 +0.4
34,983 - Atu6023 0.63 -0.8
35,046 + Atu6023 0.67 +0.6
35,054 - Atu6023 0.67 +0.9
35,181 - Atu6023 0.73 +0.7
35,204 - Atu6023 0.75 -0.1
35,209 - Atu6023 0.75 -1.7
35,213 + Atu6023 0.75 +1.4
35,221 - Atu6023 0.76 -0.5
35,259 + Atu6023 0.77 -0.9
35,276 + Atu6023 0.78 +1.4
35,284 - Atu6023 0.79 +1.7
35,325 - Atu6023 0.81 +1.2
35,409 + Atu6023 0.85 +1.2
35,457 - Atu6023 0.88 +0.7
35,531 - +0.5
35,536 - -0.2
35,546 - -0.8
35,575 + +1.0
35,575 + +0.4
35,575 + +0.1
35,575 + -1.1
35,575 + -0.1
35,575 + -0.4
35,575 + +0.2
35,575 + +0.0
35,583 - -0.3
35,583 - +0.7
35,583 - -0.4
35,583 - +0.1
35,583 - +0.6
35,583 - +0.3
35,598 - +0.2
35,724 + -0.3
35,725 + +0.7
35,733 - -0.2
35,742 - +0.8
35,783 + +0.6
35,874 + +0.3
35,934 + Atu6024 0.12 +0.2
35,992 - Atu6024 0.19 +1.0
36,029 + Atu6024 0.23 +0.2
36,029 + Atu6024 0.23 -1.3
36,029 + Atu6024 0.23 -0.0
36,037 - Atu6024 0.24 -1.2
36,037 - Atu6024 0.24 -0.3
36,037 - Atu6024 0.24 +2.0
36,039 + Atu6024 0.24 +0.2
36,042 - Atu6024 0.24 +1.2
36,055 + Atu6024 0.26 -0.8
36,063 - Atu6024 0.26 -1.9
36,236 + Atu6024 0.45 -0.3
36,251 + Atu6024 0.47 +1.4
36,258 + Atu6024 0.48 +1.5
36,307 + Atu6024 0.53 -0.8
36,355 + Atu6024 0.58 -1.0
36,355 + Atu6024 0.58 -1.6
36,355 + Atu6024 0.58 -0.7
36,363 - Atu6024 0.59 -0.2
36,363 - Atu6024 0.59 -0.0
36,386 + Atu6024 0.62 +0.0
36,400 - Atu6024 0.63 +1.5
36,453 - Atu6024 0.69 +1.5
36,559 + Atu6024 0.80 -0.1
36,559 + Atu6024 0.80 -0.5
36,562 - Atu6024 0.81 +0.2
36,562 - Atu6024 0.81 +0.2
36,562 - Atu6024 0.81 +0.5
36,562 - Atu6024 0.81 -0.9
36,571 + Atu6024 0.82 +0.2
36,579 + Atu6024 0.83 +0.3
36,579 - Atu6024 0.83 -0.2
36,579 - Atu6024 0.83 +0.9
36,581 + Atu6024 0.83 +0.4
36,581 + Atu6024 0.83 -0.8
36,597 + Atu6024 0.84 +0.8
36,597 + Atu6024 0.84 +0.6
36,597 + Atu6024 0.84 +0.8
36,597 + Atu6024 0.84 +0.5
36,605 - Atu6024 0.85 +0.8
36,605 - Atu6024 0.85 +0.5
36,605 - Atu6024 0.85 -0.1
36,605 - Atu6024 0.85 +0.7
36,639 + Atu6024 0.89 +1.2

Or see this region's nucleotide sequence